YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_SHEON.

Description	E-value	Query Range	Subject Range
NUSB_SHELP - N utilization substance protein B homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=nus...	158.0	[0..1]	[134..1]
NUSB_SHESW - N utilization substance protein B homolog OS=Shewanella sp. (strain W3-18-1) GN=nusB PE=3 SV=1	156.0	[0..1]	[134..1]
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	156.0	[0..2]	[133..17]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	155.0	[0..2]	[133..17]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	155.0	[0..2]	[133..17]
NUSB_SHEB9 - N utilization substance protein B homolog OS=Shewanella baltica (strain OS195) GN=nusB PE=3 SV=1 NUSB_SHEB8 - N utilization substance protein B homolog OS=Shewanella baltica (strain OS185) GN=nusB PE=3 SV=1 NUSB_SHEB2 - N utilization substance protein B homolog OS=Shewanella baltica (strain OS223) GN=nusB PE=3 SV=1 NUSB_SHEPC - N utilization substance protein B homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) G... gi\|124509887, gi... - gi\|124546619\|ref\|ZP_01705686.1\| NusB antitermination factor [Shewanella putrefaciens 200], gi\|124509... NUSB_SHEB5 - N utilization substance protein B homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=nu...	155.0	[0..1]	[134..1]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	154.0	[0..2]	[133..17]
NUSB_SHEAM - N utilization substance protein B homolog OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN...	152.0	[0..1]	[133..1]
NUSB_SHESA - N utilization substance protein B homolog OS=Shewanella sp. (strain ANA-3) GN=nusB PE=3 SV=1 NUSB_SHESR - N utilization substance protein B homolog OS=Shewanella sp. (strain MR-7) GN=nusB PE=3 SV=1 NUSB_SHESM - N utilization substance protein B homolog OS=Shewanella sp. (strain MR-4) GN=nusB PE=3 SV=1	151.0	[0..1]	[134..1]
NUSB_IDILO - N utilization substance protein B homolog OS=Idiomarina loihiensis GN=nusB PE=3 SV=1 NUSB_IDILO - N utilization substance protein B homolog OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 ...	151.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSERRKAR RLAVQAIYSW QLSGNNIADV EHEFLTEQSL DGVDVAYFRE LFAGVATKKT  60
   61 QLDELIIPHL DRPIDEVSPV EKAIVRLAAY ELTFRKDVPF KVAINEAIEL AKAFGADESH 120
  121 KFVNGLLDKL VARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1ey1A
Description:	Antitermination factor NusB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: