| Protein: | gi|24374963, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 929 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374963, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
554.0 | [0..1] | [929..7] |
|
|
553.0 | [0..1] | [929..7] |
|
|
550.0 | [0..1] | [929..7] |
|
|
541.0 | [0..1] | [929..53] |
|
|
534.0 | [0..1] | [929..7] |
|
|
533.0 | [0..1] | [929..1] |
|
|
512.0 | [0..1] | [924..7] |
|
|
511.0 | [0..1] | [921..7] |
|
|
510.0 | [0..1] | [924..29] |
|
|
506.0 | [0..13] | [917..2] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MTKYSLRSWV LVLALAPTIL VGILLGSYFT INRFYELEDT LIEQGSNIIE PLAIASEVGL 60
61 VGNDREATKR LLAAAQLNKS TLVKSIAIFD IHNQLFVTSH YHKDFEIMRY KEALTNLQKT 120
121 EIEHVGDSLI LRTPIF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.479 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.476 | d.93.1 | SH2 domain |
| View | Download | 0.387 | d.93.1 | SH2 domain |
| View | Download | 0.386 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.367 | d.169.1 | C-type lectin-like |
|
Region A: Residues: [137-268] |
1 11 21 31 41 51
| | | | | |
1 ATATPTGSEP ANVDIQTDNG ELLGYISVII NKERALLEQH RAAVAAFIIV LIGVQLNLLF 60
61 TFRLVKNVTQ PITEMVRVVA KIREGKLDAR LQGNLIGELD LLKRGINAMA GSLSEYHDEM 120
121 QQNIDQATSD LR
|
| Detection Method: | |
| Confidence: | 3.74 |
| Match: | 2f95B |
| Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [269-530] |
1 11 21 31 41 51
| | | | | |
1 ETLEQIEIQN VELDLAKKRA LEASRIKSEF LANMSHELRT PLNGVIGFAR QLVKTPLHSS 60
61 QVDYINTIER SATNLLAIIN DILDFSKLEA GKMVLESMPF GLRETLGETI TLISGSAQAK 120
121 GLELVVDIAP NVPDNVNGDS MRVCQIINNL VGNAIKFTDS GSVLVKLELQ AQTDEQVVLR 180
181 CDVIDTGIGI DESQQDFLFQ AFGQADSSIS RRFGGTGLGL VITKRLVNQM GGQIGFTSSV 240
241 DKGSNFWFTL PLGLGQFQIG DS
|
| Detection Method: | |
| Confidence: | 51.30103 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [531-811] |
1 11 21 31 41 51
| | | | | |
1 LPLEKLQNKT VLFYEPRVLT HSVISRQLKQ WDTKVTHHQH IPSLQTTLST TEHQFDYVLL 60
61 SCHGFNNPNH LVSTLIQAKA KTDCLIVLFD CQEQDMLSQF IRPNADVVLS LPVSEHQLAR 120
121 NMLYPPMEYD LLPPVSIAVP AARQSLTVLA VDDNFANLKL IDTLLNELVT TVIAVNSGEE 180
181 AVKQAKTRTF DLIFMDIQMP GTDGISATKQ IRQGSMNRNT PIIAVTAHAI AEERELILGS 240
241 GMDGYLPKPI DEAALKAEIN RWITRPKFTH FDLHTLNWDL C
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 1w25A |
| Description: | Response regulator PleD in complex with c-diGMP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| two-component response regulator activity | 7.02872640261738 | bayes_pls_golite062009 |
| signal transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| molecular transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
| transcription regulator activity | 3.44888100104099 | bayes_pls_golite062009 |
| protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
| two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
| protein kinase activity | 2.08303977202039 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.84345371541189 | bayes_pls_golite062009 |
| kinase activity | 1.7325547043888 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.47952516519975 | bayes_pls_golite062009 |
| binding | 1.22427537074115 | bayes_pls_golite062009 |
| DNA binding | 1.11037597107903 | bayes_pls_golite062009 |
| nucleic acid binding | 1.05519146337499 | bayes_pls_golite062009 |
| transferase activity | 0.826951625983535 | bayes_pls_golite062009 |
| transcription factor activity | 0.62886970109503 | bayes_pls_golite062009 |
|
Region A: Residues: [812-929] |
1 11 21 31 41 51
| | | | | |
1 LTQANHKSGL ALDMLRMLLD SLPQTVSAIE AALSQNDQVT MLSTIHKLHG ASCYCGVPTT 60
61 QRLCQEIESA LKREARVEDL EPEILELLDE LTKVESAAKQ VLSQLSAEIT DDQKNGLL
|
| Detection Method: | |
| Confidence: | 45.045757 |
| Match: | 2oqrA |
| Description: | No description for 2oqrA was found. |
