YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPD_SHEON.

Description	E-value	Query Range	Subject Range
gi\|1098479 - gi\|1098479\|gb\|AAC37050.1\| glucose-1-phosphate thymidyl transferase [Neisseria meningitidis]	185.0	[0..13]	[245..1]
gi\|71906877, gi\|... - gi\|71906877\|ref\|YP_284464.1\| glucose-1-phosphate thymidylyltransferase [Dechloromonas aromatica RCB]...	183.0	[0..22]	[245..1]
gi\|11261719 - pir\|\|B81240 glucose-1-phosphate thymidylyltransferase NMB0080, NMB0062 [imported] - Neisseria mening... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=rml... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B GN=rmlA1 PE=3 SV=2	180.0	[0..26]	[245..1]
gi\|45250012 - gi\|45250012\|gb\|AAS55725.1\| glucose-1-phosphate thymidyltransferase [Aneurinibacillus thermoaerophilu...	180.0	[0..26]	[245..1]
RMLA_NEIMA - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup A GN=rmlA1 PE=3 SV=1 RMLA_NEIMA - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup A / serotype 4A (strai... gi\|11261721 - pir\|\|H82014 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) NMA0205 [imported] - Neisseria m...	179.0	[0..26]	[245..1]
gi\|34811708, gi\|... - gi\|34811708\|pdb\|1H5S\|B Chain B, Thymidylyltransferase Complexed With Tmp, gi\|21466153\|pdb\|1H5T\|B Cha...	178.0	[0..23]	[245..1]
gi\|9957857 - gi\|9957857\|gb\|AAG09532.1\|AF279623_3 glucose-1-phosphate thymidylyltransferase [Salmonella enterica]	177.0	[0..23]	[245..1]
gi\|197361929, gi... - gi\|197361929\|ref\|YP_002141566.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica ... gi\|56127258, gi\|... - gi\|56413001\|ref\|YP_150076.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero...	177.0	[0..23]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLEATSQ TETQVAVQLE PLSSNVVAIV PAAGIGSRMG AGKPKQYLPL LGQSILAHTL  60
   61 DKLLSHPLIS QVIVALHPED ADFYALPQAK HPKLKTVIGG SERANSVLAA LDKAPDNSWA 120
  121 LVHDAARPCL MASDIDKLLT SRVQFPQGAI LAMPVRDTMK RANSLGEINS TVCRDNLWHA 180
  181 LTPQLFPTSL LRLHLQGALN AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA 240
  241 ELFLMRAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	1vgtA
Description:	Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	2.01680144494637	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
transferase activity	1.47184463413038	bayes_pls_golite062009
nucleotidyltransferase activity	1.03393419806381	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.651454753851031	bayes_pls_golite062009
UDP-glycosyltransferase activity	0.423789091098118	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.361674579616957	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: