YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374890, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374890, gi|....

Description	E-value	Query Range	Subject Range
gi\|146293803, gi... - gi\|77814862\|ref\|ZP_00814114.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella putrefacien...	315.0	[0..1]	[412..1]
gi\|82742870, gi\|... - gi\|82742870\|ref\|ZP_00905546.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella sp. W3-18-1...	314.0	[0..1]	[412..1]
gi\|68542067, gi\|... - gi\|68542067\|ref\|ZP_00581804.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella baltica OS1...	308.0	[0..1]	[411..1]
gi\|160876312, gi... - gi\|160876312\|ref\|YP_001555628.1\| cyclopropane-fatty-acyl-phospholipid synthase [Shewanella baltica O...	305.0	[0..1]	[411..1]
gi\|78509881, gi\|... - gi\|78690748\|ref\|ZP_00855388.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella sp. MR-7], ...	293.0	[0..1]	[415..1]
gi\|69167241, gi\|... - gi\|69949257\|ref\|ZP_00637317.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella frigidimari...	292.0	[0..1]	[410..1]
gi\|113884198, gi... - gi\|82497591\|ref\|ZP_00883123.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella sp. MR-4], ...	291.0	[0..1]	[415..1]
gi\|254230171, gi... - gi\|75854516\|ref\|ZP_00762205.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	291.0	[0..1]	[407..1]
gi\|78687313, gi\|... - gi\|78687313\|ref\|ZP_00852065.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Shewanella sp. ANA-3],...	291.0	[0..1]	[415..1]
gi\|91226042, gi\|... - gi\|91226042\|ref\|ZP_01260969.1\| cyclopropane-fatty-acyl-phospholipid synthase [Vibrio alginolyticus 1...	287.0	[0..1]	[407..1]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTASQSSV VTAKLPDSLA RKLLLKALEN LPNGCLTIVE GDKSYRFGEH HSDLHATLVV  60
   61 KHPSFYRQVM LSGSIGAGEG YIQGYWSSPD LTKVVQLFAR NLPLLDQIEA KFSWLTGTIN 120
  121 RLKHLLNRNS QQGSKRNILA HYDLGNALYE QFLDREMLYS SALYPHSEAS LADAQLHKLK 180
  181 TICERLDLKP GQTLLEIGTG WGALAIYAAK NYGVHVTTTT ISDAQYAYAK ARVEREGLSD 240
  241 SVTLLTEDYR NLSGQYDRLV SIEMIEAVGH EYLPGFFKKL ESLLKPEGRM LLQAITISDQ 300
  301 RYDSYRKSVD FIQRYIFPGG CLPSVQQMVG HLAKRTDMQV WSIDDMGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1kywA
Description:	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transcription factor activity	1.13996978841074	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.644010137949015	bayes_pls_golite062009
methyltransferase activity	0.635463629299812	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.181420092548185	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [349-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYAKTLKDWH DNFDRSVAQI QTLGYGEDFI RMWKFYLSYC EGGFLERTTS TVHLVAVRPG  60
   61 YRLPNAINRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: