YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349430, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349430, gi|....

Description	E-value	Query Range	Subject Range
gi\|59480588, gi\|... - gi\|59712487\|ref\|YP_205263.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio fischeri ...	234.0	[0..4]	[234..29]
gi\|117919766, gi... - gi\|78686560\|ref\|ZP_00851326.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	230.0	[0..1]	[235..1]
gi\|254286488, gi... - gi\|254286488\|ref\|ZP_04961445.1\| flagellar protein, putative [Vibrio cholerae AM-19226], gi\|197752012... gi\|153829335, gi... - gi\|153829335\|ref\|ZP_01982002.1\| putative flagellar protein [Vibrio cholerae 623-39], gi\|148875176\|gb... gi\|153825364, gi... - gi\|153825364\|ref\|ZP_01978031.1\| flagellar protein, putative [Vibrio cholerae MZO-2], gi\|149741048\|gb... gi\|147674697, gi... - gi\|227118649\|ref\|YP_002820545.1\| flagellar protein, putative [Vibrio cholerae O395], gi\|227014099\|gb... gi\|227082327, gi... - gi\|227082327\|ref\|YP_002810878.1\| flagellar protein, putative [Vibrio cholerae M66-2], gi\|227010215\|g... gi\|11355898 - pir\|\|B82107 probable flagellar protein VC2203 [imported] - Vibrio cholerae (strain N16961 serogroup ... gi\|229519220, gi... - gi\|229519220\|ref\|ZP_04408663.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|229332566, gi... - gi\|229528792\|ref\|ZP_04418182.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|229355225, gi... - gi\|229507720\|ref\|ZP_04397225.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|183012970, gi... - gi\|183179559\|ref\|ZP_02957770.1\| flagellar protein, putative [Vibrio cholerae MZO-3], gi\|183012970\|gb... gi\|229513847, gi... - gi\|229513847\|ref\|ZP_04403309.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|121726549, gi... - gi\|121726549\|ref\|ZP_01679798.1\| flagellar protein, putative [Vibrio cholerae V52], gi\|121631002\|gb\|E... gi\|121549532, gi... - gi\|121586266\|ref\|ZP_01676056.1\| flagellar protein, putative [Vibrio cholerae 2740-80], gi\|121549532\|... gi\|125619346, gi... - gi\|254849332\|ref\|ZP_05238682.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio choler... gi\|229369879, gi... - gi\|229607224\|ref\|YP_002877872.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae... gi\|15642202, gi\|... - gi\|9656759\|gb\|AAF95348.1\| flagellar protein, putative [Vibrio cholerae O1 biovar El Tor str. N16961]... gi\|124119812, gi... - gi\|153221283\|ref\|ZP_01952298.1\| flagellar protein, putative [Vibrio cholerae MAK 757], gi\|124119812\|... gi\|126512389, gi... - gi\|153817121\|ref\|ZP_01969788.1\| flagellar protein, putative [Vibrio cholerae NCTC 8457], gi\|12651238... gi\|254225797, gi... - gi\|254225797\|ref\|ZP_04919402.1\| flagellar protein, putative [Vibrio cholerae V51], gi\|194537090\|ref\|... gi\|153820832, gi... - gi\|229512085\|ref\|ZP_04401564.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ...	226.0	[0..7]	[234..32]
gi\|113969600, gi... - gi\|82495213\|ref\|ZP_00880790.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	226.0	[0..1]	[235..1]
gi\|114046832, gi... - gi\|78689573\|ref\|ZP_00854233.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	226.0	[0..1]	[235..1]
gi\|54308091, gi\|... - gi\|54308091\|ref\|YP_129111.1\| flagellar basal body P-ring biosynthesis protein FlgA [Photobacterium p...	225.0	[0..4]	[234..9]
gi\|68520762, gi\|... - gi\|68541501\|ref\|ZP_00581244.1\| Flageller protein FlgA [Shewanella baltica OS155], gi\|68520762\|gb\|EAN...	225.0	[0..1]	[235..1]
gi\|120598226, gi... - gi\|82741800\|ref\|ZP_00904512.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane... gi\|77814162, gi\|... - gi\|77814162\|ref\|ZP_00813428.1\| Flageller protein FlgA [Shewanella putrefaciens CN-32], gi\|77810907\|g... gi\|124546470, gi... - gi\|124546470\|ref\|ZP_01705546.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewan...	223.0	[0..1]	[235..1]
gi\|160876209, gi... - gi\|160876209\|ref\|YP_001555525.1\| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella b...	221.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNLVHFFR IFVLFISTAA NAETVVPSVS AISELAKALI NEKISVPANA KVDINPQTVD  60
   61 QRMLPAQCAS PIKVELASDR EIRRNNTVKV SCNTPD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAYPWQIFIS VRVDILFPVV VATEPLAPGE LISPTQVEIR YVDQNSLRGM QFSDINQLSG  60
   61 VRVKRRVAKN NPIFANNLCF VCKNDAVSIY VRSSNFVLKT VGEALQDGNI GDQIRVKNSS 120
  121 SNKELDATVT AIGEVEVRM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.57
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits