YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349430, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349430, gi|....

Description	E-value	Query Range	Subject Range
gi\|59480588, gi\|... - gi\|59712487\|ref\|YP_205263.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio fischeri ...	234.0	[0..4]	[234..29]
gi\|117919766, gi... - gi\|78686560\|ref\|ZP_00851326.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	230.0	[0..1]	[235..1]
gi\|254286488, gi... - gi\|254286488\|ref\|ZP_04961445.1\| flagellar protein, putative [Vibrio cholerae AM-19226], gi\|197752012... gi\|153829335, gi... - gi\|153829335\|ref\|ZP_01982002.1\| putative flagellar protein [Vibrio cholerae 623-39], gi\|148875176\|gb... gi\|153825364, gi... - gi\|153825364\|ref\|ZP_01978031.1\| flagellar protein, putative [Vibrio cholerae MZO-2], gi\|149741048\|gb... gi\|147674697, gi... - gi\|227118649\|ref\|YP_002820545.1\| flagellar protein, putative [Vibrio cholerae O395], gi\|227014099\|gb... gi\|227082327, gi... - gi\|227082327\|ref\|YP_002810878.1\| flagellar protein, putative [Vibrio cholerae M66-2], gi\|227010215\|g... gi\|11355898 - pir\|\|B82107 probable flagellar protein VC2203 [imported] - Vibrio cholerae (strain N16961 serogroup ... gi\|229519220, gi... - gi\|229519220\|ref\|ZP_04408663.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|229332566, gi... - gi\|229528792\|ref\|ZP_04418182.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|229355225, gi... - gi\|229507720\|ref\|ZP_04397225.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|183012970, gi... - gi\|183179559\|ref\|ZP_02957770.1\| flagellar protein, putative [Vibrio cholerae MZO-3], gi\|183012970\|gb... gi\|229513847, gi... - gi\|229513847\|ref\|ZP_04403309.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ... gi\|121726549, gi... - gi\|121726549\|ref\|ZP_01679798.1\| flagellar protein, putative [Vibrio cholerae V52], gi\|121631002\|gb\|E... gi\|121549532, gi... - gi\|121586266\|ref\|ZP_01676056.1\| flagellar protein, putative [Vibrio cholerae 2740-80], gi\|121549532\|... gi\|125619346, gi... - gi\|254849332\|ref\|ZP_05238682.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio choler... gi\|229369879, gi... - gi\|229607224\|ref\|YP_002877872.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae... gi\|15642202, gi\|... - gi\|9656759\|gb\|AAF95348.1\| flagellar protein, putative [Vibrio cholerae O1 biovar El Tor str. N16961]... gi\|124119812, gi... - gi\|153221283\|ref\|ZP_01952298.1\| flagellar protein, putative [Vibrio cholerae MAK 757], gi\|124119812\|... gi\|126512389, gi... - gi\|153817121\|ref\|ZP_01969788.1\| flagellar protein, putative [Vibrio cholerae NCTC 8457], gi\|12651238... gi\|254225797, gi... - gi\|254225797\|ref\|ZP_04919402.1\| flagellar protein, putative [Vibrio cholerae V51], gi\|194537090\|ref\|... gi\|153820832, gi... - gi\|229512085\|ref\|ZP_04401564.1\| flagellar basal-body P-ring formation protein FlgA [Vibrio cholerae ...	226.0	[0..7]	[234..32]
gi\|113969600, gi... - gi\|82495213\|ref\|ZP_00880790.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	226.0	[0..1]	[235..1]
gi\|114046832, gi... - gi\|78689573\|ref\|ZP_00854233.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane...	226.0	[0..1]	[235..1]
gi\|54308091, gi\|... - gi\|54308091\|ref\|YP_129111.1\| flagellar basal body P-ring biosynthesis protein FlgA [Photobacterium p...	225.0	[0..4]	[234..9]
gi\|68520762, gi\|... - gi\|68541501\|ref\|ZP_00581244.1\| Flageller protein FlgA [Shewanella baltica OS155], gi\|68520762\|gb\|EAN...	225.0	[0..1]	[235..1]
gi\|120598226, gi... - gi\|82741800\|ref\|ZP_00904512.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewane... gi\|77814162, gi\|... - gi\|77814162\|ref\|ZP_00813428.1\| Flageller protein FlgA [Shewanella putrefaciens CN-32], gi\|77810907\|g... gi\|124546470, gi... - gi\|124546470\|ref\|ZP_01705546.1\| flagellar basal-body P-ring formation protein FlgA, putative [Shewan...	223.0	[0..1]	[235..1]
gi\|160876209, gi... - gi\|160876209\|ref\|YP_001555525.1\| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella b...	221.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNLVHFFR IFVLFISTAA NAETVVPSVS AISELAKALI NEKISVPANA KVDINPQTVD  60
   61 QRMLPAQCAS PIKVELASDR EIRRNNTVKV SCNTPD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAYPWQIFIS VRVDILFPVV VATEPLAPGE LISPTQVEIR YVDQNSLRGM QFSDINQLSG  60
   61 VRVKRRVAKN NPIFANNLCF VCKNDAVSIY VRSSNFVLKT VGEALQDGNI GDQIRVKNSS 120
  121 SNKELDATVT AIGEVEVRM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.57
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits