YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374759, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374759, gi|....

Description	E-value	Query Range	Subject Range
gi\|24459276 - gi\|24459276\|gb\|AAL86629.1\| FlgD [Vibrio fischeri] gi\|197317217, gi... - gi\|197335727\|ref\|YP_002156701.1\| flagellar basal body rod modification protein [Vibrio fischeri MJ11... gi\|59480583, gi\|... - gi\|59712482\|ref\|YP_205258.1\| flagellar basal body rod modification protein [Vibrio fischeri ES114], ...	212.0	[0..25]	[250..5]
gi\|146316321, gi... - gi\|75827492\|ref\|ZP_00756927.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae O395], gi\|22... gi\|194537093, gi... - gi\|75820905\|ref\|ZP_00750943.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V51], gi\|254... gi\|121631009, gi... - gi\|75816985\|ref\|ZP_00747441.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V52], gi\|121... gi\|121586270, gi... - gi\|121586270\|ref\|ZP_01676060.1\| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80], ... gi\|124115842, gi... - gi\|153213643\|ref\|ZP_01948916.1\| basal-body rod modification protein FlgD [Vibrio cholerae 1587], gi\|... gi\|124119802, gi... - gi\|153221273\|ref\|ZP_01952288.1\| basal-body rod modification protein FlgD [Vibrio cholerae MAK 757], ... gi\|153817067, gi... - gi\|153817067\|ref\|ZP_01969734.1\| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457]... gi\|229512080, gi... - gi\|229512080\|ref\|ZP_04401559.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|183179564, gi... - gi\|183179564\|ref\|ZP_02957775.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3], gi... gi\|116190199, gi... - gi\|75831298\|ref\|ZP_00760563.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae MO10], gi\|25... gi\|75823916, gi\|... - gi\|75823916\|ref\|ZP_00753390.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae RC385], gi\|2... gi\|148875182, gi... - gi\|153829341\|ref\|ZP_01982008.1\| basal-body rod modification protein FlgD [Vibrio cholerae 623-39], g... gi\|149741046, gi... - gi\|153825362\|ref\|ZP_01978029.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2], gi... gi\|227010210, gi... - gi\|227082322\|ref\|YP_002810873.1\| basal-body rod modification protein FlgD [Vibrio cholerae M66-2], g... gi\|229507725, gi... - gi\|229507725\|ref\|ZP_04397230.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229349023, gi... - gi\|229513842\|ref\|ZP_04403304.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229519216, gi... - gi\|229519216\|ref\|ZP_04408659.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229522147, gi... - gi\|229522147\|ref\|ZP_04411564.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229528797, gi... - gi\|229528797\|ref\|ZP_04418187.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|9656754, gi\|1... - gi\|9656754\|gb\|AAF95343.1\| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor... gi\|229607229, gi... - gi\|229607229\|ref\|YP_002877877.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae... gi\|11282646 - pir\|\|E82106 basal-body rod modification protein FlgD VC2198 [imported] - Vibrio cholerae (strain N16...	212.0	[0..25]	[250..5]
gi\|91225872, gi\|... - gi\|91225872\|ref\|ZP_01260841.1\| flagellar basal-body rod modification protein D [Vibrio alginolyticus...	211.0	[0..25]	[250..5]
gi\|28897551, gi\|... - gi\|28897551\|ref\|NP_797156.1\| flagellar basal body rod modification protein [Vibrio parahaemolyticus ... gi\|5361007, gi\|2... - gi\|5361007\|gb\|AAD42914.1\|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus], gi\|2880576... gi\|149746796, gi... - gi\|153839686\|ref\|ZP_01992353.1\| flagellar basal body rod modification protein [Vibrio parahaemolytic...	210.0	[0..25]	[250..5]
gi\|75855313, gi\|... - gi\|75855313\|ref\|ZP_00762968.1\| COG1843: Flagellar hook capping protein [Vibrio sp. Ex25], gi\|2542301...	210.0	[0..25]	[250..5]
gi\|84377157, gi\|... - gi\|84388090\|ref\|ZP_00990986.1\| flagellar basal body rod modification protein [Vibrio splendidus 12B0...	210.0	[0..24]	[250..5]
gi\|27359822, gi\|... - gi\|27363706\|ref\|NP_759234.1\| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6]... gi\|37197888, gi\|... - gi\|37679146\|ref\|NP_933755.1\| flagellar basal body rod modification protein [Vibrio vulnificus YJ016]...	209.0	[0..25]	[250..5]
gi\|86146156, gi\|... - gi\|86146156\|ref\|ZP_01064482.1\| flagellar basal body rod modification protein [Vibrio sp. MED222], gi... gi\|218321822, gi... - gi\|218708803\|ref\|YP_002416424.1\| flagellar basal body rod modification protein [Vibrio splendidus LG...	208.0	[0..25]	[250..5]
gi\|46912522, gi\|... - gi\|54308096\|ref\|YP_129116.1\| flagellar basal body rod modification protein [Photobacterium profundum...	205.0	[0..25]	[250..5]
gi\|90328217, gi\|... - gi\|90411004\|ref\|ZP_01219018.1\| flagellar basal body rod modification protein [Photobacterium profund...	203.0	[0..25]	[253..5]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTSSQVTQ TKNQPNTVST NNTKTSTNST GNPFLDGLRL PSNSAVPEAK SQQLTQEDFF  60
   61 SLLSQQLSMQ DPFKPVDNDQ MIAQMASFST VDGISKLNDQ IVNLNSVMTS SQALQASGLV 120
  121 GRKVLLPTDT GYI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.124939
Match:	PF03963.5
Description:	No description for PF03963.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.636	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.582	N/A	N/A	a.2.5	Prefoldin
View	Download	0.551	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.532	N/A	N/A	a.2.5	Prefoldin
View	Download	0.510	N/A	N/A	a.7.5	Tubulin chaperone cofactor A

Predicted Domain #2

Region A:
Residues: [134-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAESPGLNGV ISTSEKIPVI NIRIEDEKGQ VVRTFTVDGS KGGNTDVKWD GLNDKGEPVA  60
   61 AGNYSIKASG LVNDKSQALA VSTYGHVTSV SLGTAATGAI LNLKGGMAFK LSDVLAITEV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.045757
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits