YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374747, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374747, gi|....

Description	E-value	Query Range	Subject Range
gi\|54308108, gi\|... - gi\|54308108\|ref\|YP_129128.1\| putative flagellar hook-associated protein 2 [Photobacterium profundum ...	366.0	[0..1]	[448..1]
gi\|126175135, gi... - gi\|68541518\|ref\|ZP_00581261.1\| Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associ...	357.0	[0..1]	[455..1]
gi\|90328229, gi\|... - gi\|90411016\|ref\|ZP_01219030.1\| putative flagellar hook-associated protein 2 [Photobacterium profundu...	352.0	[0..1]	[448..1]
gi\|127512290, gi... - gi\|78366409\|ref\|ZP_00836689.1\| Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associ...	352.0	[0..1]	[454..1]
gi\|78686543, gi\|... - gi\|78686543\|ref\|ZP_00851309.1\| flagellar hook-associated protein FliD [Shewanella sp. ANA-3], gi\|785...	351.0	[0..1]	[456..1]
gi\|82720833, gi\|... - gi\|82741817\|ref\|ZP_00904529.1\| flagellar hook-associated protein FliD [Shewanella sp. W3-18-1], gi\|8...	351.0	[0..1]	[456..1]
gi\|145565369, gi... - gi\|77814145\|ref\|ZP_00813411.1\| Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associ...	346.0	[0..1]	[456..1]
gi\|113948270, gi... - gi\|160876184\|ref\|YP_001555500.1\| flagellar hook-associated 2 domain-containing protein [Shewanella b...	344.0	[0..1]	[455..1]
gi\|78701922, gi\|... - gi\|78701922\|ref\|ZP_00866368.1\| flagellar hook-associated protein 2 [Alkalilimnicola ehrlichei MLHE-1...	339.0	[0..2]	[452..3]
gi\|68545856, gi\|... - gi\|68545856\|ref\|ZP_00585405.1\| Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associ...	337.0	[0..1]	[454..1]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISATGMGS GLDISNIVKV LVDAEKAPKE AMFNKTEDSI KAKVSAMGTL KSALSTFQDA  60
   61 VKKLQTGDAL NQRKISVSTD AYLSAKAEKT AQAGSYGIKV EQVATNHKIA G

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.055517
Match:	PF02465.9
Description:	No description for PF02465.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.784	0.065	flagellum assembly	a.47.2	t-snare proteins
View	Download	0.770	0.053	flagellum assembly	a.24.9	alpha-catenin/vinculin
View	Download	0.793	0.044	flagellum assembly	a.7.7	BAG domain
View	Download	0.846	0.023	flagellum assembly	a.7.5	Tubulin chaperone cofactor A
View	Download	0.737	N/A	N/A	a.47.2	t-snare proteins

Predicted Domain #2

Region A:
Residues: [112-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNVADATQPV GEGSLAFGVN GKSFSVDIAA TDSLAEIAKK VNEASDNVGV TATVITSDAG  60
   61 SRLVFSANKT GEDNQISLTA TNTSGSGVTD M

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.69897
Match:	PF07196.4
Description:	No description for PF07196.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.956	0.571	flagellum assembly	b.40.4	Nucleic acid-binding proteins
View	Download	0.929	0.021	flagellum assembly	d.12.1	Ribosomal proteins L23 and L15e
View	Download	0.916	0.014	flagellum assembly	b.3.2	Carboxypeptidase D, a regulatory domain
View	Download	0.893	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.837	N/A	N/A	d.12.1	Ribosomal proteins L23 and L15e

Predicted Domain #3

Region A:
Residues: [203-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGSGNTSTLQ DAKNAVLYID GQKVTSQSNE VKNAITGVTL NLTNADVAKT TTVKIEQDNE  60
   61 AVKTNVQAFV DAYNSLVTTI DKMSSYDKDK KTAAALQGDS MIRSIESQLR SVASGRVPTA 120
  121 DGGSIALYDI GIKADRYGKL SVDDTKLNKA LTEDMSSVEA LFATPD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [369-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGLANRFNDL ANSYVKSSGL IADRQSSYTT QQSRLADQRA AFTLKMDQLT ARLTKQFNAM  60
   61 DLVVGKLNQQ SSGLVDRLNS LPGAVKKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.454	0.220	flagellum assembly	a.118.1	ARM repeat
View	Download	0.401	0.090	flagellum assembly	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.383	0.007	flagellum assembly	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.364	0.007	flagellum assembly	a.70.1	N-terminal domain of the delta subunit of the F1F0-ATP synthase
View	Download	0.378	N/A	N/A	d.203.1	DsrC, the gamma subunit of dissimilatory sulfite reductase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits