YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349341, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349341, gi|....

Description	E-value	Query Range	Subject Range
gi\|5524166 - gi\|5524166\|gb\|AAD44158.1\|AF125322_9 Wzy [Escherichia coli]	379.0	[0..9]	[400..9]
gi\|40950666 - gi\|40950666\|gb\|AAR97964.1\| wzy [Shigella dysenteriae]	364.0	[0..10]	[399..10]
gi\|51243889, gi\|... - gi\|51243889\|ref\|YP_063773.1\| hypothetical protein DP0037 [Desulfotalea psychrophila LSv54], gi\|50874...	89.0	[0..12]	[398..11]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAKEYIPW LLGFIFVNII ATFIMLDSNE LIGDLKGTVV SNPYILLLSL ILIVITYFFL  60
   61 MWPFFISVFS IKIKKLKFNR DENVISLRLG FFILFMQVCF FLFNSYYGVN VAGTNNKTAD 120
  121 TPLALIWVII PADALFVVYY AFYRDSKFFK VNLIFWLFSN IIRGWAGVIL FVIFFEWCRL 180
  181 VRKNALSFTK IFIAVLLVLI LYPLLTIAKW VIRAS

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [216-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRDFSFEVL YDAVFKNLNE QSYLDLIYFG LEHIIGRLQL TSILNEIINM KDKLQFLYQK  60
   61 NDFQPFWMEG LHGIFIERLF YGEKTRNLGV AFTEYANFNW IFEVGDWNIN VSLPAWFFIS 120
  121 PWFSILYLLY IFSLCFFSVF LVKLIGQTNS ARDLIWLSWL VYLVPLWLGT FVALIYTLFV 180
  181 FLLLKCFFAT KVHQNASSTL LQ