YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349341, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349341, gi|....

Description	E-value	Query Range	Subject Range
gi\|5524166 - gi\|5524166\|gb\|AAD44158.1\|AF125322_9 Wzy [Escherichia coli]	379.0	[0..9]	[400..9]
gi\|40950666 - gi\|40950666\|gb\|AAR97964.1\| wzy [Shigella dysenteriae]	364.0	[0..10]	[399..10]
gi\|51243889, gi\|... - gi\|51243889\|ref\|YP_063773.1\| hypothetical protein DP0037 [Desulfotalea psychrophila LSv54], gi\|50874...	89.0	[0..12]	[398..11]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAKEYIPW LLGFIFVNII ATFIMLDSNE LIGDLKGTVV SNPYILLLSL ILIVITYFFL  60
   61 MWPFFISVFS IKIKKLKFNR DENVISLRLG FFILFMQVCF FLFNSYYGVN VAGTNNKTAD 120
  121 TPLALIWVII PADALFVVYY AFYRDSKFFK VNLIFWLFSN IIRGWAGVIL FVIFFEWCRL 180
  181 VRKNALSFTK IFIAVLLVLI LYPLLTIAKW VIRAS

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [216-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRDFSFEVL YDAVFKNLNE QSYLDLIYFG LEHIIGRLQL TSILNEIINM KDKLQFLYQK  60
   61 NDFQPFWMEG LHGIFIERLF YGEKTRNLGV AFTEYANFNW IFEVGDWNIN VSLPAWFFIS 120
  121 PWFSILYLLY IFSLCFFSVF LVKLIGQTNS ARDLIWLSWL VYLVPLWLGT FVALIYTLFV 180
  181 FLLLKCFFAT KVHQNASSTL LQ