YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374688, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	643 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374688, gi|....

Description	E-value	Query Range	Subject Range
gi\|186681828, gi... - gi\|23128937\|ref\|ZP_00110773.1\| COG0367: Asparagine synthase (glutamine-hydrolyzing) [Nostoc punctifo...	533.0	[0..1]	[642..1]
gi\|2244692 - gi\|2244692\|emb\|CAA69108.1\| ORF71x8 [Vibrio cholerae]	520.0	[0..1]	[640..1]
gi\|3724317 - gi\|3724317\|dbj\|BAA33606.1\| probable asparagine synthetase [Vibrio cholerae] gi\|116190110, gi... - gi\|75831211\|ref\|ZP_00760477.1\| COG0367: Asparagine synthase (glutamine-hydrolyzing) [Vibrio cholerae...	520.0	[0..1]	[640..1]
gi\|1588972, gi\|7... - pir\|\|S70877 hypothetical protein 2 - Vibrio cholerae, gi\|1588972\|prf\|\|2209416B ORF 2 gi\|1230578 - gi\|1230578\|gb\|AAC46243.1\| orf2 [Vibrio cholerae O139]	516.0	[0..1]	[640..1]
gi\|154356189, gi... - gi\|94492204\|ref\|ZP_01299412.1\| hypothetical protein CburD_01000534 [Coxiella burnetii Dugway 7E9-12]...	515.0	[0..1]	[641..1]
gi\|29654168, gi\|... - gi\|29654168\|ref\|NP_819860.1\| asparagine synthase (glutamine-hydrolyzing) [Coxiella burnetii RSA 493]...	513.0	[0..1]	[641..1]
gi\|161762847, gi... - gi\|95927166\|ref\|ZP_01309929.1\| hypothetical protein CburR_01001013 [Coxiella burnetii RSA 331], gi\|1...	512.0	[0..1]	[641..1]
gi\|71038219, gi\|... - gi\|71065234\|ref\|YP_263961.1\| asparagine synthase, glutamine-hydrolyzing [Psychrobacter arcticus 273-...	507.0	[0..1]	[639..1]
gi\|22293957, gi\|... - gi\|22297780\|ref\|NP_681027.1\| asparagine synthetase [Thermosynechococcus elongatus BP-1], gi\|22293957...	505.0	[0..1]	[638..1]
gi\|20271385, gi\|... - gi\|28394259\|gb\|AAO31734.1\| putative asparagine synthetase [Burkholderia cenocepacia], gi\|20271385\|gb... gi\|206563885, gi... - gi\|206563885\|ref\|YP_002234648.1\| putative asparagine synthetase [Burkholderia cenocepacia J2315], gi...	502.0	[0..1]	[639..1]

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Predicted Domain #1

Region A:
Residues: [1-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGFAGFFNT SNLTDHARIL ECMGLELFNR GPDSFGIWFN SDDRIGLVHR RLAIVDLSAA  60
   61 GHQPMTSDSG RYIISYNGEI YNHQELRDEL ESIRQYNWRG HSDTETLLAA IEQWGLKITL 120
  121 QKATGMFGIA LWDTLNKELY LARDRFGEKP VYYGLHKDAF IFASQLNAFR AYPDFKPEIN 180
  181 RDSITLLLRH NYIPAPYSIY SDIHKLLPAT ILKLDSNNNI SLETYWSAKD IMSNASSTET 240
  241 DLPVGKQVEA LENTLKKAVA LQMSADVPLG AFLSGGVDSS LIVSLMQAQS NKPVKTFSIG 300
  301 FDDPRFNEAV FAKEVAKHLG TEHTELYLTA EDALEVIPKL AEIYDEPFSD SSQIPTFLVS 360
  361 KIARQYVTVS LSGDAGDELF CGYNRYLMTS KVWKRLSVLP VFLRSFLANV FTFVPVNVWN 420
  421 LFGKLLPSRL QLSNLGDKLH KAAAVLACRD VEQLYLGLVS HWQNPEQVVL GSKEPLTVLT 480
  481 DPKRKANFSD PILQMMAQDT LSYLTDDILV KVDRAAMAVS LETRVPFLDH SVLEHAWR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1ct9A
Description:	Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
asparagine synthase (glutamine-hydrolyzing) activity	3.49425794794018	bayes_pls_golite062009
asparaginase activity	2.94567124791739	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.17174228126736	bayes_pls_golite062009
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity	0.886636554961189	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [539-643]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLDLKLRDG KTKWCLREIL YKYVPKDLIE RPKMGFAVPL DAWLRGPLKV WADNLLAAER  60
   61 LRQEGFFDAE LIDRMWQEHK SGKRNWQYQL WDILMFQSWY EKYHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1j1zA
Description:	Argininosuccinate synthetase, N-terminal domain; Argininosuccinate synthetase, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: