YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374680, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374680, gi|....

Description	E-value	Query Range	Subject Range
gi\|89094082, gi\|... - gi\|89094082\|ref\|ZP_01167025.1\| dTDP-D-glucose 4;6-dehydratase [Oceanospirillum sp. MED92], gi\|890815...	346.0	[0..1]	[340..1]
gi\|209753446, gi... - pir\|\|A91219 dTDP-glucose 4,6-dehydratase [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|189362621, gi... - gi\|189362621\|gb\|EDU81040.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189365802, gi... - gi\|189365802\|gb\|EDU84218.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|13364196, gi\|... - gi\|15833975\|ref\|NP_312748.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7], gi\|13364196\|db... gi\|189358938, gi... - gi\|189358938\|gb\|EDU77357.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168751746, gi... - gi\|188014279\|gb\|EDU52401.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|217325882, gi... - gi\|217325882\|ref\|ZP_03441966.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. TW14588]... gi\|209399629, gi... - gi\|209399629\|ref\|YP_002273306.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4115]... gi\|13364196, gi\|... - gi\|15833975\|ref\|NP_312748.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189376800, gi... - gi\|189376800\|gb\|EDU95216.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|189373224, gi... - gi\|189373224\|gb\|EDU91640.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|168780684, gi... - gi\|189001405\|gb\|EDU70391.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168775664, gi... - gi\|187768885\|gb\|EDU32729.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|208818281, gi... - gi\|208818281\|ref\|ZP_03258601.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4042],... gi\|208813029, gi... - gi\|208813029\|ref\|ZP_03254358.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4045],... gi\|254595186, gi... - gi\|254795786\|ref\|YP_003080623.1\| dTDP-D-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. TW143... gi\|208725490, gi... - gi\|208805689\|ref\|ZP_03248026.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4206],... gi\|195938077 - gi\|195938077\|ref\|ZP_03083459.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli O157:H7 str. EC4024]	345.0	[0..2]	[340..3]
gi\|160876126, gi... - gi\|160876126\|ref\|YP_001555442.1\| dTDP-glucose 4,6-dehydratase [Shewanella baltica OS195], gi\|1608616...	344.0	[0..1]	[338..1]
gi\|56459650, gi\|... - gi\|56459650\|ref\|YP_154931.1\| dTDP-D-glucose 4,6-dehydratase [Idiomarina loihiensis L2TR], gi\|5617866...	344.0	[0..1]	[340..1]
gi\|91213310, gi\|... - gi\|91213310\|ref\|YP_543296.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli UTI89], gi\|91074884\|gb\|A... gi\|117626048, gi... - gi\|117626048\|ref\|YP_859371.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli APEC O1], gi\|115515172\|... gi\|237702798, gi... - gi\|237702798\|ref\|ZP_04533279.1\| dTDP-glucose 4,6-dehydratase [Escherichia sp. 3_2_53FAA], gi\|2269029... gi\|218367623, gi... - gi\|218560854\|ref\|YP_002393767.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli S88], gi\|218367623\|e...	344.0	[0..2]	[340..3]
gi\|49529344, gi\|... - gi\|50083368\|ref\|YP_044878.1\| dTDP-D-glucose-4,6-dehydratase [Acinetobacter sp. ADP1], gi\|49529344\|em...	343.0	[0..1]	[339..2]
gi\|68247685, gi\|... - gi\|69256133\|ref\|ZP_00605748.1\| dTDP-glucose 4,6-dehydratase [Magnetococcus sp. MC-1], gi\|68247685\|gb...	343.0	[0..2]	[339..3]
gi\|73857780, gi\|... - gi\|74314303\|ref\|YP_312722.1\| dTDP-glucose 4,6-dehydratase [Shigella sonnei Ss046], gi\|73857780\|gb\|AA...	343.0	[0..2]	[340..3]
gi\|227888628, gi... - gi\|227888628\|ref\|ZP_04006433.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli 83972], gi\|227834467\|... gi\|26250527, gi\|... - gi\|26250527\|ref\|NP_756567.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli CFT073], gi\|26110957\|gb\|...	343.0	[0..2]	[340..3]
gi\|110644114, gi... - gi\|110644114\|ref\|YP_671844.1\| dTDP-glucose 4,6-dehydratase [Escherichia coli 536], gi\|110345706\|gb\|A... gi\|75236365, gi\|... - gi\|75236365\|ref\|ZP_00720465.1\| COG1088: dTDP-D-glucose 4,6-dehydratase [Escherichia coli F11], gi\|19...	343.0	[0..2]	[339..3]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILVTGGAG FIGSALVRML IEQTESVVLN FDKLTYASHP ESLAGVADNE RYHFVQADIC  60
   61 DRARLEQVLQ QFQPDLMMHL AAESHVDRSI DGPAEFIQTN IVGTYTLLEA CRSYYQTLGQ 120
  121 AQQRRFRLHH ISTDEVFGSL TETGLFSETS AYDPSSPYSA SKASADHLVR AWHRTYALPI 180
  181 VITNCSNNYG PFQYPEKLIP LMVSNALQSK PLPIYGNGQQ VRDWLYVDDH VKALYLVATQ 240
  241 GQLGQTYNIG GSCEQTNLTV VRHICSLLEE LVPTHPQSLA MGNAGFADLI QYVVDRPGHD 300
  301 VRYAIDASKI QRELGWRPQE SFESGLRKTV EWIINQQYPK TSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.09691
Match:	1bxkA
Description:	dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose 4-epimerase activity	2.13934644118967	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
nucleic acid binding	0.868888700854563	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.82673050487418	bayes_pls_golite062009
DNA binding	0.790382977752475	bayes_pls_golite062009
binding	0.784517759335365	bayes_pls_golite062009
transcription regulator activity	0.613310508772122	bayes_pls_golite062009
transcription factor activity	0.11102650759187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: