YRC Public Data Repository - Protein Structure Prediction

Protein:	TGT_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TGT_SHEON.

Description	E-value	Query Range	Subject Range
gi\|90579386, gi\|... - gi\|90579386\|ref\|ZP_01235196.1\| queuine tRNA-ribosyltransferase [Vibrio angustum S14], gi\|90440219\|gb...	625.0	[0..1]	[374..1]
gi\|89072680, gi\|... - gi\|89072680\|ref\|ZP_01159245.1\| queuine tRNA-ribosyltransferase [Photobacterium sp. SKA34], gi\|890515...	624.0	[0..1]	[374..1]
gi\|37197672, gi\|... - gi\|37678930\|ref\|NP_933539.1\| queuine tRNA-ribosyltransferase [Vibrio vulnificus YJ016], gi\|37197672\|...	623.0	[0..1]	[372..58]
gi\|27363913, gi\|... - gi\|27363913\|ref\|NP_759441.1\| queuine tRNA-ribosyltransferase [Vibrio vulnificus CMCP6], gi\|27360030\|...	622.0	[0..1]	[372..37]
gi\|90324328, gi\|... - gi\|90414612\|ref\|ZP_01222585.1\| queuine tRNA-ribosyltransferase [Photobacterium profundum 3TCK], gi\|9...	621.0	[0..1]	[374..1]
TGT_PHOLL - Queuine tRNA-ribosyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=tgt PE=3 SV=1 TGT_PHOLL - Queuine tRNA-ribosyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP...	621.0	[0..1]	[372..1]
gi\|116190745, gi... - gi\|75832015\|ref\|ZP_00761274.1\| COG0343: Queuine/archaeosine tRNA-ribosyltransferase [Vibrio cholerae... gi\|150421374, gi... - gi\|75823250\|ref\|ZP_00752766.1\| COG0343: Queuine/archaeosine tRNA-ribosyltransferase [Vibrio cholerae... gi\|125622393, gi... - gi\|75818786\|ref\|ZP_00748910.1\| COG0343: Queuine/archaeosine tRNA-ribosyltransferase [Vibrio cholerae... TGT_VIBCM - Queuine tRNA-ribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tgt PE=3 SV=1 gi\|229357868, gi... - gi\|229505645\|ref\|ZP_04395155.1\| tRNA-guanine transglycosylase [Vibrio cholerae BX 330286], gi\|229357... gi\|153829390, gi... - gi\|153829390\|ref\|ZP_01982057.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae 623-39], gi\|1488751... gi\|229513120, gi... - gi\|229513120\|ref\|ZP_04402586.1\| tRNA-guanine transglycosylase [Vibrio cholerae TMA 21], gi\|229350013... gi\|229517805, gi... - gi\|229517805\|ref\|ZP_04407249.1\| tRNA-guanine transglycosylase [Vibrio cholerae RC9], gi\|229344520\|gb... TGT_VIBCH - Queuine tRNA-ribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16... gi\|229339799, gi... - gi\|229523436\|ref\|ZP_04412843.1\| tRNA-guanine transglycosylase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|229525387, gi... - gi\|229525387\|ref\|ZP_04414792.1\| tRNA-guanine transglycosylase [Vibrio cholerae bv. albensis VL426], ... gi\|229333903, gi... - gi\|229530129\|ref\|ZP_04419519.1\| tRNA-guanine transglycosylase [Vibrio cholerae 12129(1)], gi\|2293339... gi\|229371318, gi... - gi\|229608663\|ref\|YP_002879311.1\| tRNA-guanine transglycosylase [Vibrio cholerae MJ-1236], gi\|2293713... gi\|124113666, gi... - gi\|153217325\|ref\|ZP_01951076.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae 1587], gi\|124113666... gi\|153220705, gi... - gi\|153220705\|ref\|ZP_01951816.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae MAK 757], gi\|124120... gi\|153802817, gi... - gi\|153802817\|ref\|ZP_01957403.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae MZO-3], gi\|12412164... gi\|153818846, gi... - gi\|153818846\|ref\|ZP_01971513.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae NCTC 8457], gi\|1265... gi\|254285459, gi... - gi\|254285459\|ref\|ZP_04960423.1\| queuine tRNA-ribosyltransferase [Vibrio cholerae AM-19226], gi\|19775... TGT_VIBCH - Queuine tRNA-ribosyltransferase OS=Vibrio cholerae GN=tgt PE=3 SV=1 gi\|229510683, gi... - gi\|229510683\|ref\|ZP_04400162.1\| tRNA-guanine transglycosylase [Vibrio cholerae B33], gi\|229350648\|gb...	619.0	[0..1]	[372..3]
TGT_VIBVY - Queuine tRNA-ribosyltransferase OS=Vibrio vulnificus (strain YJ016) GN=tgt PE=3 SV=2 TGT_VIBVU - Queuine tRNA-ribosyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=tgt PE=3 SV=2 TGT_VIBVU - Queuine tRNA-ribosyltransferase OS=Vibrio vulnificus GN=tgt PE=3 SV=2	619.0	[0..1]	[372..3]
gi\|238787974, gi... - gi\|77974336\|ref\|ZP_00829877.1\| COG0343: Queuine/archaeosine tRNA-ribosyltransferase [Yersinia freder...	618.0	[0..1]	[373..1]
gi\|238720690, gi... - gi\|77962938\|ref\|ZP_00826753.1\| COG0343: Queuine/archaeosine tRNA-ribosyltransferase [Yersinia mollar...	618.0	[0..1]	[372..1]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFELDTTDG RARRGRLIFD RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH  60
   61 LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI 120
  121 FLDPEKSMQI QHALGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAKRSR DEFDRLENPN 180
  181 SLFGIIQGSV YEDLRDESLK GLVEIGFDGY AVGGLAVGEP KEDMHRILEH VCPQILADKP 240
  241 RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTSPLDP 300
  301 KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVKD 360
  361 FYTSQGREVP ELVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	160.0
Match:	1ozmA
Description:	Y106F mutant of Z. mobilis TGT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
queuine tRNA-ribosyltransferase activity	5.68673071384353	bayes_pls_golite062009
transferase activity	3.21194535271238	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.84864811414771	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.53039738178366	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.29132603807317	bayes_pls_golite062009
protein binding	0.136438951368546	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: