YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374583, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	702 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374583, gi|....

Description	E-value	Query Range	Subject Range
gi\|113969775, gi... - gi\|82496521\|ref\|ZP_00882088.1\| DNA topoisomerase III [Shewanella sp. MR-4], gi\|82405476\|gb\|EAP46149....	700.0	[0..1]	[702..1]
gi\|78505312, gi\|... - gi\|78686914\|ref\|ZP_00851674.1\| DNA topoisomerase III [Shewanella sp. ANA-3], gi\|78505312\|gb\|EAP18845...	698.0	[0..1]	[702..1]
gi\|78509973, gi\|... - gi\|78690649\|ref\|ZP_00855291.1\| DNA topoisomerase III [Shewanella sp. MR-7], gi\|78509973\|gb\|EAP23353....	697.0	[0..1]	[702..26]
gi\|68558202, gi\|... - gi\|94311236\|ref\|YP_584446.1\| DNA topoisomerase III [Ralstonia metallidurans CH34], gi\|93355088\|gb\|AB... gi\|254521025, gi... - gi\|254521025\|ref\|ZP_05133080.1\| DNA topoisomerase III subfamily [Stenotrophomonas sp. SKA14], gi\|225... gi\|218771653, gi... - gi\|218891427\|ref\|YP_002440294.1\| DNA topoisomerase III [Pseudomonas aeruginosa LESB58], gi\|218771653... gi\|24461623 - gi\|24461623\|gb\|AAN62194.1\|AF440523_101 putative DNA topoisomerase III [Pseudomonas aeruginosa] gi\|154157772, gi... - gi\|154253822\|ref\|YP_001414646.1\| DNA topoisomerase III [Parvibaculum lavamentivorans DS-1], gi\|15415...	695.0	[0..1]	[699..1]
gi\|107102047 - gi\|107102047\|ref\|ZP_01365965.1\| hypothetical protein PaerPA_01003095 [Pseudomonas aeruginosa PACS2] gi\|193222358 - gi\|193222358\|emb\|CAL62124.2\| DNA topoisomerase 3 (DNA topoisomerase III) [Herminiimonas arsenicoxyda...	693.0	[0..1]	[699..1]
gi\|77459223, gi\|... - gi\|77459223\|ref\|YP_348730.1\| DNA topoisomerase III [Pseudomonas fluorescens Pf0-1], gi\|77383226\|gb\|A...	688.0	[0..1]	[682..1]
gi\|48788126, gi\|... - gi\|91784576\|ref\|YP_559782.1\| DNA topoisomerase III [Burkholderia xenovorans LB400], gi\|91688530\|gb\|A... gi\|163855755 - gi\|163855755\|ref\|YP_001630053.1\| DNA topoisomerase III [Bordetella petrii DSM 12804] gi\|40019223 - gi\|40019223\|emb\|CAE92947.1\| putative DNA topoisomerase III [Pseudomonas putida] gi\|163259483 - gi\|163259483\|emb\|CAP41783.1\| DNA topoisomerase III [Bordetella petrii]	685.0	[0..1]	[699..1]
gi\|68244665, gi\|... - gi\|69262568\|ref\|ZP_00608758.1\| DNA topoisomerase III [Magnetococcus sp. MC-1], gi\|68244665\|gb\|EAN268...	684.0	[0..1]	[692..1]
gi\|48869055 - ref\|ZP_00322335.1\| COG0550: Topoisomerase IA [Haemophilus influenzae 86-028NP] gi\|42632068 - gi\|42632068\|ref\|ZP_00157606.1\| COG0550: Topoisomerase IA [Haemophilus influenzae R2866]	683.0	[0..1]	[684..1]
gi\|68248647, gi\|... - gi\|68248647\|ref\|YP_247759.1\| DNA topoisomerase III [Haemophilus influenzae 86-028NP], gi\|68056846\|gb...	683.0	[0..1]	[684..6]

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Predicted Domain #1

Region A:
Residues: [1-702]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILYIAEKPS LGRAIADVLP KPHKKGEGFI EDANGNCVSW CVGHLLEQAE PDAYNPDFKS  60
   61 WKFEHLPIVP EKWQLKPKAA TRSQLTVLKK LIKQADTLVN AGDPDREGQL LVDEVIAYLG 120
  121 VTGDKLQQTQ RLLISDLNPQ AVKRALSQLR SNREFIPLST SALARSRADW LYGMNMTRAY 180
  181 TIQGKKVGYQ GVLSVGRVQT PLLGLIVRRD EEIAHFQSKP FYEVLAHLVT DKQQFFSAKW 240
  241 QPSEACQPYM DDEGRVLSKG LAQNVVRRIT DKPAKVTQLS TKDKQQSAPL PYSLSALQID 300
  301 AAKRFGMSAK EVLDTCQSLY ERHKLITYPR SDSRYLPTEQ HGLASSVLNA ITSGAPELVA 360
  361 HSEAPNPRLK SKAWDDKKVD AHHAIIPTEK QPNLGSLSQR ERQLYLHIAR QYLAQFYPAY 420
  421 CYSETAVEVT IEGGLFKTKA RQDKSLGWKQ LFAREEGERK DTSNTETFAQ DDKDKDEGEY 480
  481 AGQLPPLILG QVLHCNQGEL VEKQTQPPKA FTDATLLGAM TGINRYVTDP EIRKILKETD 540
  541 GLGTEATRAG IIELLFKRGF IQRQGKSIVA TEVGKGLINS LPLSATTPDM TALWEASLNG 600
  601 ICHKDISYQG FMQPLLGTLH SLIQNAGAQL PSALNGLKGQ GFKRAATKKS GYRKAGVRGA 660
  661 AGGKKAGTGA KNARNSAAAS STSTTAKPTV PRRRTSKATA QA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2o19A
Description:	No description for 2o19A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits