YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374545, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374545, gi|....

Description	E-value	Query Range	Subject Range
gi\|2983181, gi\|1... - gi\|2983181\|gb\|AAC06781.1\| anthranilate synthase component II [Aquifex aeolicus VF5], gi\|15606008\|ref... gi\|7436747 - pir\|\|E70349 anthranilate synthase component II - Aquifex aeolicus	199.0	[0..1]	[194..1]
GUAA_CAMJJ - GMP synthase [glutamine-hydrolyzing] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain ...	199.0	[0..1]	[201..1]
gi\|85841879, gi\|... - gi\|86150709\|ref\|ZP_01068925.1\| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94], gi\|85841879...	198.0	[0..1]	[201..1]
gi\|85843549, gi\|... - gi\|86152664\|ref\|ZP_01070869.1\| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp. jej...	198.0	[0..1]	[201..1]
gi\|57168146, gi\|... - gi\|57168146\|ref\|ZP_00367285.1\| GMP synthase [Campylobacter coli RM2228], gi\|57020520\|gb\|EAL57189.1\| ...	198.0	[0..1]	[201..1]
GUAA_CAMLR - GMP synthase [glutamine-hydrolyzing] OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=...	198.0	[0..1]	[201..1]
GUAA_CLOTH - GMP synthase [glutamine-hydrolyzing] OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBR...	197.0	[0..3]	[201..6]
GUAA_CAMJR - GMP synthase [glutamine-hydrolyzing] OS=Campylobacter jejuni (strain RM1221) GN=guaA PE=3 SV=1	197.0	[0..1]	[201..1]
gi\|82401802, gi\|... - gi\|82500177\|ref\|ZP_00885602.1\| GMP synthase, C-terminal:GMP synthase, N-terminal [Caldicellulosirupt...	197.0	[0..3]	[201..6]
gi\|85836575, gi\|... - gi\|86145604\|ref\|ZP_01063934.1\| bifunctional GMP synthase/glutamine amidotransferase protein [Vibrio ...	197.0	[0..2]	[201..9]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYLLDNFD SFTYNLVDQF RSLGCEVVIY RNDVAADYIA DKLLAETAPT ALVLSPGPGA  60
   61 PHEAGSMMEL IDKVAGKVPM LGICLGHQAM VEYYGGKVER APFVVHGKAS PTFHNGTGVF 120
  121 ANLPSPLPVA RYHSLVATKV PNCLDVIATT DDMPMAILHA KHRAVGFQFH PESILTTLGS 180
  181 TLLTQTLVYL TQAMTSRHAG AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1i7qB
Description:	Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	4.48164623771604	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
ligase activity	1.77692713123297	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.628648036096965	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: