YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349071, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349071, gi|....

Description	E-value	Query Range	Subject Range
gi\|9635591, gi\|5... - gi\|9635591\|ref\|NP_061502.1\| major head protein [Pseudomonas phage D3], gi\|5059252\|gb\|AAD38957.1\| maj...	315.0	[0..3]	[396..1]
gi\|120559376, gi... - gi\|82741546\|ref\|ZP_00904265.1\| Phage major capsid protein, HK97 [Shewanella sp. W3-18-1], gi\|8272111...	308.0	[0..1]	[396..1]
gi\|90294218, gi\|... - gi\|90294218\|ref\|ZP_01213813.1\| hypothetical protein Bpse17_02001005 [Burkholderia pseudomallei 1710a...	304.0	[0..7]	[391..23]
gi\|38505387, gi\|... - gi\|38707895\|ref\|NP_945035.1\| gp5 [Burkholderia phage phi1026b], gi\|38505387\|gb\|AAR23156.1\| gp5 [Bact... gi\|76811214, gi\|... - gi\|76811214\|ref\|YP_333085.1\| HK97 family phage major capsid protein [Burkholderia pseudomallei 1710b... gi\|254260231, gi... - gi\|254260231\|ref\|ZP_04951285.1\| phage major capsid protein, HK97 family [Burkholderia pseudomallei 1...	304.0	[0..7]	[391..21]
gi\|254224909, gi... - gi\|75820370\|ref\|ZP_00750419.1\| COG1196: Chromosome segregation ATPases [Vibrio cholerae V51], gi\|254...	293.0	[0..6]	[396..5]
gi\|9634124, gi\|6... - gi\|9634124\|ref\|NP_037666.1\| major capsid subunit precursor [Enterobacteria phage HK022], gi\|6863116\|... CAPSD_BPHK7 - Major capsid protein OS=Enterobacteria phage HK97 GN=5 PE=1 SV=1	293.0	[0..6]	[394..7]
gi\|26988299, gi\|... - gi\|26988299\|ref\|NP_743724.1\| HK97 family phage major capsid protein [Pseudomonas putida KT2440], gi\|...	292.0	[0..9]	[396..23]
gi\|87198673, gi\|... - gi\|87198673\|ref\|YP_495930.1\| Phage major capsid protein, HK97 [Novosphingobium aromaticivorans DSM 1...	289.0	[0..7]	[396..66]
gi\|50903558, gi\|... - gi\|50914484\|ref\|YP_060456.1\| Phage prohead protease [Streptococcus pyogenes MGAS10394], gi\|50903558\|... gi\|50261617, gi\|... - gi\|50261617\|gb\|AAT72385.1\| phage major capsid protein [Streptococcus pyogenes], gi\|40218572\|gb\|AAR83...	274.0	[0..9]	[394..3]
gi\|33600680, gi\|... - gi\|33600680\|ref\|NP_888240.1\| major head protein [Bordetella bronchiseptica RB50], gi\|33568280\|emb\|CA...	274.0	[0..3]	[394..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNPNFEKQI EELGVNLTKI GDQIKSAAEE TNKQIKASGE MHAETRDKVD KLLSEQGALQ  60
   61 ARLQEAEQKL LKGAQSNQQE REQSIGERVV NDKEMEGVSS SFRGSRRVGM PRSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [115-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITSATGSGAG LVRPDRMAGI VAGPERRLTI RDLIAPGETE SNTIEYVKET GFTNNAAPVA  60
   61 EGAAKPYSEI TFGLVSAGVR TIAHLFKASR QILDDSKQLQ SFINARARYG LMLKEEVQLL 120
  121 YGNNTGANLH GIMLQASAYV KPTGATVDTE QHIDRIRLAL LQAALAEYAA DGIVLNPIDW 180
  181 AVIETLKDSN KNYLIGKPQG QTVPTLWNRP VVETQSIVQN EFLVGAFQMG AQIYDRMDIE 240
  241 VLISTENDKD FENNMVSIRA EERLALAVYR PEAFVKGNFT FA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.09691
Match:	1ohgA
Description:	STRUCTURE OF THE DSDNA BACTERIOPHAGE HK97 MATURE EMPTY CAPSID
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits