YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374443, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	717 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374443, gi|....

Description	E-value	Query Range	Subject Range
gi\|91793762, gi\|... - gi\|91793762\|ref\|YP_563413.1\| phosphate acetyltransferase [Shewanella denitrificans OS217], gi\|917157...	614.0	[0..1]	[715..1]
gi\|114563647, gi... - gi\|69951551\|ref\|ZP_00639260.1\| Phosphate acetyltransferase [Shewanella frigidimarina NCIMB 400], gi\|...	606.0	[0..1]	[715..1]
gi\|117919999, gi... - gi\|78685962\|ref\|ZP_00850735.1\| Phosphate acetyltransferase [Shewanella sp. ANA-3], gi\|78506277\|gb\|EA...	602.0	[0..1]	[717..1]
gi\|49612489, gi\|... - gi\|50121963\|ref\|YP_051130.1\| phosphate acetyltransferase [Pectobacterium atrosepticum SCRI1043], gi\|...	601.0	[0..1]	[711..1]
gi\|77815022, gi\|... - gi\|77815022\|ref\|ZP_00814267.1\| Phosphate acetyltransferase [Shewanella putrefaciens CN-32], gi\|77809... gi\|120598444, gi... - gi\|82742951\|ref\|ZP_00905624.1\| Phosphate acetyltransferase [Shewanella sp. W3-18-1], gi\|82719705\|gb\|...	601.0	[0..1]	[716..1]
gi\|229701798, gi... - gi\|229895312\|ref\|ZP_04510486.1\| phosphate acetyltransferase [Yersinia pestis Pestoides A], gi\|229701... gi\|229694476, gi... - gi\|229838110\|ref\|ZP_04458269.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... Q668Y9\|Q668Y9_YERPS - Phosphate acetyltransferase - Yersinia pseudotuberculosis gi\|229688220, gi... - gi\|229898672\|ref\|ZP_04513817.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... gi\|149365527, gi... - gi\|149365527\|ref\|ZP_01887562.1\| phosphate acetyltransferase [Yersinia pestis CA88-4125], gi\|14929194... gi\|145599254, gi... - gi\|145599254\|ref\|YP_001163330.1\| phosphate acetyltransferase [Yersinia pestis Pestoides F], gi\|14521... gi\|22125515, gi\|... - gi\|22125515\|ref\|NP_668938.1\| phosphate acetyltransferase [Yersinia pestis KIM], gi\|21958413\|gb\|AAM85... PTA_YERPE - Phosphate acetyltransferase OS=Yersinia pestis GN=pta PE=3 SV=1 gi\|229902671, gi... - gi\|229902671\|ref\|ZP_04517788.1\| phosphate acetyltransferase [Yersinia pestis Nepal516], gi\|229680118... gi\|51596917, gi\|... - gi\|51596917\|ref\|YP_071108.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|108779964, gi... - gi\|108808051\|ref\|YP_651967.1\| phosphate acetyltransferase [Yersinia pestis Antiqua], gi\|108779964\|gb... gi\|45437031, gi\|... - gi\|45442167\|ref\|NP_993706.1\| phosphate acetyltransferase [Yersinia pestis biovar Microtus str. 91001... gi\|167398784, gi... - gi\|167398784\|ref\|ZP_02304308.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. UG0... gi\|115348264, gi... - gi\|218929653\|ref\|YP_002347528.1\| phosphate acetyltransferase [Yersinia pestis CO92], gi\|16122785\|ref... gi\|165992827, gi... - gi\|166008445\|ref\|ZP_02229343.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. E19... gi\|186895997, gi... - gi\|186895997\|ref\|YP_001873109.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis PB1/+], gi... gi\|152959769, gi... - gi\|153948274\|ref\|YP_001400421.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 31758],... gi\|170023791, gi... - gi\|170023791\|ref\|YP_001720296.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis YPIII], gi...	601.0	[0..1]	[717..1]
gi\|113906543, gi... - gi\|160875884\|ref\|YP_001555200.1\| phosphate acetyltransferase [Shewanella baltica OS195], gi\|16086140... gi\|149117367, gi... - gi\|217972867\|ref\|YP_002357618.1\| phosphate acetyltransferase [Shewanella baltica OS223], gi\|21749800... gi\|68544278, gi\|... - gi\|68544278\|ref\|ZP_00583938.1\| Phosphate acetyltransferase [Shewanella baltica OS155], gi\|68518013\|g...	599.0	[0..1]	[716..1]
gi\|224467701, gi... - gi\|224583174\|ref\|YP_002636972.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pta] [protein=phosphate acetyltransferase] [protein_id=YP_005238418.1] [location=2500770..2502... gi\|204929238, gi... - gi\|204929238\|ref\|ZP_03220381.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|207857756, gi... - gi\|207857756\|ref\|YP_002244407.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|198243957, gi... - gi\|198243957\|ref\|YP_002216409.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|199603748, gi... - gi\|200386650\|ref\|ZP_03213262.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. ent... gi\|238912383 - gi\|238912383\|ref\|ZP_04656220.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197248002, gi... - gi\|197248002\|ref\|YP_002147298.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|197265259, gi... - gi\|197265259\|ref\|ZP_03165333.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194471410, gi... - gi\|194471410\|ref\|ZP_03077394.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194713110, gi... - gi\|194737608\|ref\|YP_002115408.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium GN=pta PE=1 SV=1 PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pta P... gi\|194402543, gi... - gi\|194443880\|ref\|YP_002041600.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|194448796, gi... - gi\|194448796\|ref\|YP_002046393.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|168465954, gi... - gi\|195631250\|gb\|EDX49810.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168817927, gi... - gi\|205344733\|gb\|EDZ31497.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|62180909, gi\|... - gi\|62180909\|ref\|YP_217326.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|205338663, gi... - gi\|205338663\|gb\|EDZ25427.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205349317, gi... - gi\|205349317\|gb\|EDZ35948.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168229712, gi... - gi\|205335916\|gb\|EDZ22680.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. enteric... gi\|197289725, gi... - gi\|197289725\|gb\|EDY29088.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205325221, gi... - gi\|205325221\|gb\|EDZ13060.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|167994690, gi... - gi\|205327484\|gb\|EDZ14248.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|161612930, gi... - gi\|161612930\|ref\|YP_001586895.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se...	599.0	[0..1]	[714..1]
gi\|56412765, gi\|... - gi\|56412765\|ref\|YP_149840.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|214002012 - gi\|214002012\|ref\|ZP_03412747.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|29141041, gi\|... - gi\|29141041\|ref\|NP_804383.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213427003 - gi\|213427003\|ref\|ZP_03359753.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|16761263 - gi\|16761263\|ref\|NP_456880.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|197093175, gi... - gi\|197361699\|ref\|YP_002141335.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|25321719, gi\|... - gi\|25321719\|pir\|\|AH0798 phosphate acetyltransferase (EC 2.3.1.8) [imported] - Salmonella enterica su...	599.0	[0..1]	[714..1]
gi\|113969832, gi... - gi\|113969832\|ref\|YP_733625.1\| phosphate acetyltransferase [Shewanella sp. MR-4], gi\|113884516\|gb\|ABI...	599.0	[0..1]	[717..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNIMLIPI GTGVGLTSLS LGMVRALERH GVKVQFFKPI SQLRPNDNGP ERSTTILSKS  60
   61 PTVNPLEPFD MAHAEALIRA DQTDVLMEQI IARAAECASN TETLIVEGLV PTRNHPFADD 120
  121 VNYAIAKAMD ADVIFIATPG SDTPTGLMNR LEIAYNSWGG KNNKRLIGAV INKIGAPVDD 180
  181 EGRARPDLSE VFDHQGVQRS DASIMFQLPG KSPLRILGSV PYNLDLVAPR ASDLAKHLRA 240
  241 RILNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [246-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEMNIRRLRK VTFCARSLPN MVNHIKTDSL LVTSGDRSDV IVSACLAAMN GVKIGALLLT  60
   61 GSYEPEPEIL KLCEQAFETG LPVFLIDTNT WQTSLNIQRF DHEVPVDDAV RIDLVQEYVA 120
  121 SHIDQTWIES VTKNSPR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.06
Match:	2iojA
Description:	No description for 2iojA was found.

Predicted Domain #3

Region A:
Residues: [383-717]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHRLSPPAFR YKLTELARAA HKTVVLPEGD EPRTIKAAAI CAERGIARCV LLGKKDEILR  60
   61 IAAQQDVVLG EGVVIVDPDE VRARYVEPML ELRRSKGLTE VVAKEQLEDN MVLGTMMLAQ 120
  121 DEVDGIVSGA VNTTANTIRP PLQLIKTAPG SSLVSSIFFM LMPDQVLVYG DCAINPDPNA 180
  181 EQLADIAIQS AESAKAFGIE PRVAMISYST GNSGTGSDVD KVREATRIAK EKRPDLVIDG 240
  241 PLQYDAAVMP NVARSKAPNS PVAGQATVFV FPDLNTGNTT YKAVQRSADL ISIGPMLQGM 300
  301 RKPVNDLSRG ALVDDIVYTI ALTAIQASQN DAKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.30103
Match:	1r5jA
Description:	Crystal Structure of a Phosphotransacetylase from Streptococcus pyogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	4.07470589461733	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	2.76980877987445	bayes_pls_golite062009
catalytic activity	2.71251959637136	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	2.37654914320201	bayes_pls_golite062009
oxidoreductase activity	1.34383793575786	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.23338300186555	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.23134321553105	bayes_pls_golite062009
acetyltransferase activity	0.475874744828042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: