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View Structure Prediction Details

Protein: gi|24349007, gi|...
Organism: Shewanella oneidensis MR-1
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349007, gi|....

Description E-value Query
Range		 Subject
Range
gi|109255537 - gi|109255537|gb|ABG27066.1| caffeic acid O-methyltransferase [Boehmeria nivea]
 250.0 [0..1] [357..9]
gi|114199048 - gi|114199048|gb|ABI54119.1| caffeic acid O-methyltransferase [Malus x domestica]
 249.0 [0..1] [355..9]
COMT1_PRUDU - Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
 249.0 [0..1] [355..9]
COMT1_POPTM - Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1
 248.0 [0..1] [355..9]
COMT1_ROSCH - Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1
 248.0 [0..1] [355..9]
gi|32440933 - gi|32440933|dbj|BAC78827.1| caffeic acid O-methyltransferase [Rosa chinensis var. spontanea]
 248.0 [0..1] [355..9]
COMT1_POPKI, COM... - Caffeic acid 3-O-methyltransferase 1 (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyl...
COMT1_POPKI - Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1
 247.0 [0..1] [355..9]
COMT1_CATRO - Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1
 246.0 [0..4] [354..8]
gi|7332271 - gi|7332271|gb|AAF60951.1| O-methyltransferase [Populus balsamifera subsp. trichocarpa x Populus delt...
 245.0 [0..1] [354..9]

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Predicted Domain #1
Region A:
Residues: [1-357] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFYQNPKEL SAFDAKFEAQ KIAFGPVSFQ VAHCLLKFEV LATIDKAGDQ GATLAQLAQT  60
   61 NMLNEYALGV LLDMGLSMGL VWLNEDAYVL DKTGYFLLHD DMAAINLNFV QDVCYQGLFK 120
  121 LDKALLDGRP AGLSVFGDWQ TIYPALKDLP QDAKESWFAF DHYYSDHAFP QILPLVFDHS 180
  181 PKHLVDIGGN TGKWALSCCE FDPEVEVTLM DFPGQLAVAK ENAAKRGFTD RVRTFATDLL 240
  241 DESRPFIEGA DTYWMSQFLD CFSKAQILSI LQRTAKAMTA NSQLFIVETF WDRQPSAASA 300
  301 YCVNATSLYF TAMANGNSRM YHSKDLMALL HQAGLYVDED TDNLGLGHTL LRCKRKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity, transferring one-carbon groups 1.05991383541555 bayes_pls_golite062009
methyltransferase activity 1.04943568976829 bayes_pls_golite062009
transcription regulator activity 0.985738293903934 bayes_pls_golite062009
nucleic acid binding 0.88117765002793 bayes_pls_golite062009
DNA binding 0.811011703622623 bayes_pls_golite062009
binding 0.796293768647826 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.414568039011584 bayes_pls_golite062009
transcription factor activity 0.219681379631971 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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