YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374386, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	578 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374386, gi|....

Description	E-value	Query Range	Subject Range
gi\|91084087 - gi\|91084087\|ref\|XP_968449.1\| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]	302.0	[0..2]	[553..10]
gi\|114684359 - gi\|114684359\|ref\|XP_531445.2\| PREDICTED: solute carrier family 5 (inositol transporters), member 3 [...	296.0	[0..1]	[491..5]
gi\|45709089, gi\|... - gi\|45709089\|gb\|AAH67621.1\| Solute carrier family 5 (sodium/glucose cotransporter), member 1 [Danio r...	293.0	[0..2]	[570..25]
HGNC:11036\|MIM:1... - carrier family 5 (sodium/glucose cotransporter), member 1, carrier family 5 (sodium/glucose cotransp... SLC5A1 - solute carrier family 5 (sodium/glucose cotransporter), member 1 gi\|109451492, gi... - gi\|208965542\|dbj\|BAG72785.1\| solute carrier family 5 (sodium/glucose cotransporter), member 1 [synth...	291.0	[0..2]	[570..25]
gi\|109093932 - gi\|109093932\|ref\|XP_001112212.1\| PREDICTED: solute carrier family 5 (sodium/glucose cotransporter), ...	291.0	[0..2]	[570..25]
gi\|73978243 - gi\|73978243\|ref\|XP_539743.2\| PREDICTED: similar to solute carrier family 5 (iodide transporter), mem...	287.0	[0..4]	[561..209]
gi\|2148056 - gi\|2148056\|pir\|\|S59638 glucose transport protein SGLT1, parotid gland - sheep	284.0	[0..2]	[570..25]
gi\|6681727 - gi\|6681727\|gb\|AAF23269.1\| sodium-glucose cotransporter 1 [Mus musculus]	284.0	[0..2]	[570..25]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQGLTYLI VGLSFALYIG IALWTRAGST KEFYVAGGGV HPVVNGMATA ADWMSAASFI  60
   61 SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFLGER YY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQAARTVAVI CAIFICFTYI AGQMRGVGVV FSRFLEVEVD TGVYIGMAVV FFYSVLGGMK  60
   61 GITYTQVAQY CVLIFAFMVP AIFLSVMMTG HIIPQIGFGA QLLDAAGNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [222-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGVYLLDKLN NLSVDLGFAP YTDGSKSMID VLCITGALMV GTAGLPHVIV RFFTVPKVKD  60
   61 ARVSAGWALV FIAIMYTTVP ALAAFSRVNM IETINGPDQK GVAYETAPNW IKNWEKTGLI 120
  121 KWDDKNGDGK IYYATGKIED AASTNEMKID NDIIVLATPE IANLPAWVIA LVAAGGLAAA 180
  181 LSTSAGLLLV ISTSVSHDLL KKNLMP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [428-578]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NISDKKELMY ARLAAGIGIV IAGYFGVNPP GFVAAVVAFA FGLAASSLFP AIIMGIFSKT  60
   61 MNKEGAIAGM ILGLFFTSGY IVYFKFIDPT ANVPANWFLG ISPEGIGMVG MVINFVVAAI 120
  121 VSKVTAATPV HVQEMVESIR FPKGAGEASD H

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits