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View Structure Prediction Details

Protein: gi|24374386, gi|...
Organism: Shewanella oneidensis MR-1
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374386, gi|....

Description E-value Query
Range
Subject
Range
gi|91084087 - gi|91084087|ref|XP_968449.1| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]
302.0 [0..2] [553..10]
gi|114684359 - gi|114684359|ref|XP_531445.2| PREDICTED: solute carrier family 5 (inositol transporters), member 3 [...
296.0 [0..1] [491..5]
gi|45709089, gi|... - gi|45709089|gb|AAH67621.1| Solute carrier family 5 (sodium/glucose cotransporter), member 1 [Danio r...
293.0 [0..2] [570..25]
HGNC:11036|MIM:1... - carrier family 5 (sodium/glucose cotransporter), member 1, carrier family 5 (sodium/glucose cotransp...
SLC5A1 - solute carrier family 5 (sodium/glucose cotransporter), member 1
gi|109451492, gi... - gi|208965542|dbj|BAG72785.1| solute carrier family 5 (sodium/glucose cotransporter), member 1 [synth...
291.0 [0..2] [570..25]
gi|109093932 - gi|109093932|ref|XP_001112212.1| PREDICTED: solute carrier family 5 (sodium/glucose cotransporter), ...
291.0 [0..2] [570..25]
gi|73978243 - gi|73978243|ref|XP_539743.2| PREDICTED: similar to solute carrier family 5 (iodide transporter), mem...
287.0 [0..4] [561..209]
gi|2148056 - gi|2148056|pir||S59638 glucose transport protein SGLT1, parotid gland - sheep
284.0 [0..2] [570..25]
gi|6681727 - gi|6681727|gb|AAF23269.1| sodium-glucose cotransporter 1 [Mus musculus]
284.0 [0..2] [570..25]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQGLTYLI VGLSFALYIG IALWTRAGST KEFYVAGGGV HPVVNGMATA ADWMSAASFI  60
   61 SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFLGER YY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQAARTVAVI CAIFICFTYI AGQMRGVGVV FSRFLEVEVD TGVYIGMAVV FFYSVLGGMK  60
   61 GITYTQVAQY CVLIFAFMVP AIFLSVMMTG HIIPQIGFGA QLLDAAGNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGVYLLDKLN NLSVDLGFAP YTDGSKSMID VLCITGALMV GTAGLPHVIV RFFTVPKVKD  60
   61 ARVSAGWALV FIAIMYTTVP ALAAFSRVNM IETINGPDQK GVAYETAPNW IKNWEKTGLI 120
  121 KWDDKNGDGK IYYATGKIED AASTNEMKID NDIIVLATPE IANLPAWVIA LVAAGGLAAA 180
  181 LSTSAGLLLV ISTSVSHDLL KKNLMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [428-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NISDKKELMY ARLAAGIGIV IAGYFGVNPP GFVAAVVAFA FGLAASSLFP AIIMGIFSKT  60
   61 MNKEGAIAGM ILGLFFTSGY IVYFKFIDPT ANVPANWFLG ISPEGIGMVG MVINFVVAAI 120
  121 VSKVTAATPV HVQEMVESIR FPKGAGEASD H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle