YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374310, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374310, gi|....

Description	E-value	Query Range	Subject Range
gi\|115588890, gi... - gi\|116053669\|ref\|YP_793996.1\| hypothetical protein PA14_72810 [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|194554054, gi... - gi\|254243069\|ref\|ZP_04936391.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|126169732, gi... - gi\|254237801\|ref\|ZP_04931124.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|9951856, gi\|1... - gi\|9951856\|gb\|AAG08904.1\|AE004964_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218774851, gi... - gi\|218894622\|ref\|YP_002443492.1\| putative acyl-CoA thioester hydrolase [Pseudomonas aeruginosa LESB5... gi\|11348349 - pir\|\|F82956 conserved hypothetical protein PA5519 [imported] - Pseudomonas aeruginosa (strain PAO1)	159.0	[0..1]	[158..29]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	158.0	[0..1]	[159..1]
gi\|68514140, gi\|... - gi\|68548137\|ref\|ZP_00587653.1\| Thioesterase superfamily [Shewanella amazonensis SB2B], gi\|68514140\|g...	156.0	[0..1]	[157..1]
gi\|84318062 - gi\|84318062\|ref\|ZP_00966491.1\| COG1607: Acyl-CoA hydrolase [Pseudomonas aeruginosa C3719]	156.0	[0..1]	[158..1]
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	154.0	[0..1]	[157..1]
gi\|91192163, gi\|... - gi\|91223350\|ref\|ZP_01258616.1\| acyl-CoA thioester hydrolase-related protein [Vibrio alginolyticus 12...	154.0	[0..1]	[158..1]
gi\|116185769, gi... - gi\|75856643\|ref\|ZP_00764268.1\| COG1607: Acyl-CoA hydrolase [Vibrio sp. Ex25], gi\|254229097\|ref\|ZP_04...	154.0	[0..1]	[158..1]
gi\|46916960, gi\|... - gi\|54303530\|ref\|YP_133523.1\| putative acyl-CoA thioester hydrolase [Photobacterium profundum SS9], g...	153.0	[0..1]	[158..1]
gi\|28901252, gi\|... - gi\|28901252\|ref\|NP_800907.1\| acyl-CoA thioester hydrolase-related protein [Vibrio parahaemolyticus R... gi\|28809765 - gi\|28809765\|dbj\|BAC62740.1\| acyl-CoA thioester hydrolase-related protein [Vibrio parahaemolyticus RI...	153.0	[0..1]	[158..1]
gi\|117920996, gi... - gi\|78688092\|ref\|ZP_00852815.1\| cytosolic long-chain acyl-CoA thioester hydrolase family protein [She...	153.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIDRQITL RFLSEPADVN FGGKVHGGAV MKWIDLAAYA CAAGWSGKYC ITAYAGGIRF  60
   61 VQPILVGNIV EVSAKVIYTG KTSMHIGIDV RAGDPKVSER HLTTHCIVIM VAVDEQGQPT 120
  121 PVPEWVPQTE NDIHLRDSAL RLMEMRKKIG AEMEAHVQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1vpmA
Description:	Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: