YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374280, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374280, gi|....

Description	E-value	Query Range	Subject Range
gi\|85695191, gi\|... - gi\|85710787\|ref\|ZP_01041848.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Idiomarina baltica OS145], ...	292.0	[0..5]	[392..1]
gi\|56178391, gi\|... - gi\|56459381\|ref\|YP_154662.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Idiomarina loihiensis L2TR], ...	289.0	[0..5]	[392..1]
HEM0_DELLE - 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Delphinapterus leucas GN=ALAS2 PE=2...	289.0	[0..9]	[393..140]
HEM0_BOVIN - 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Bos taurus GN=ALAS2 PE=2 SV=1	288.0	[0..9]	[393..145]
gi\|94409483 - gi\|94409483\|ref\|XP_985853.1\| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific, m...	287.0	[0..1]	[399..465]
BIOF_THEPX - 8-amino-7-oxononanoate synthase OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_0779 PE=3 SV=1 gi\|242258126, gi... - gi\|242258126\|ref\|ZP_04802958.1\| pyridoxal phosphate-dependent acyltransferase [Thermoanaerobacter sp...	287.0	[0..11]	[392..8]
gi\|28586 - gi\|28586\|emb\|CAA39795.1\| delta-aminolevulinate synthase (erythroid) [Homo sapiens]	287.0	[0..1]	[399..132]
gi\|241884087, gi... - gi\|241903572\|ref\|ZP_04788294.1\| pyridoxal phosphate-dependent acyltransferase [Thermoanaerobacter br... BIOF_THEP3 - 8-amino-7-oxononanoate synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=...	287.0	[0..11]	[392..8]
gi\|89098413, gi\|... - gi\|89098413\|ref\|ZP_01171297.1\| 8-amino-7-oxononanoate synthase [Bacillus sp. NRRL B-14911], gi\|89086...	286.0	[0..1]	[392..1]
HEM0_OPSTA - 5-aminolevulinate synthase, erythroid-specific, mitochondrial OS=Opsanus tau GN=alas2 PE=2 SV=1	286.0	[0..6]	[392..137]

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Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLESKLA SKIRARQQAL AEQGLLRQRQ ALSIDAVLSD AEPQFCFEGQ TYLNFSSNDY  60
   61 LGLSRAPELI AALHRGAQQY GVGSGASPLV TGYSEAHLAL ETKLCKITGF EAALLFSSGF 120
  121 SANTTLCKTL FDKQDVVLAD KLVHASIIDG LRDSGADFKR FLHNSTESAE RLLAKNTVSA 180
  181 LITESVFSMD GDIAPIKALS SLCRAHNVWL IVDDAHGFGV SDIFNQPAAN LIDIQIVTFG 240
  241 KALGCQGAAI LGSRELIAFL VSNAREYIYS TALSPANAAL ALAAVEHCEA QPELRQKLQR 300
  301 NISLFKQLCQ DADIPLLGSD TPIQPLIIGD AKQTLLVAQK LKAMGIWVGA IRPPTVPVGS 360
  361 ARLRITLSAS HSEAAIRRCV NGITQVLAEC VLPRVSERPE R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.522879
Match:	1fc4A
Description:	2-amino-3-ketobutyrate CoA ligase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
5-aminolevulinate synthase activity	3.15163480353521	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	2.35743383627426	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
N-succinyltransferase activity	1.81799375593294	bayes_pls_golite062009
threonine aldolase activity	1.80396420390785	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
glycine C-acetyltransferase activity	0.935794708043259	bayes_pls_golite062009
transferase activity	0.737426388870721	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups	0.659071155545801	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.319452731970428	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: