YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374188, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374188, gi|....

Description	E-value	Query Range	Subject Range
gi\|75437779, gi\|... - gi\|75437779\|ref\|ZP_00733503.1\| acyl-CoA hydrolase [Actinobacillus succinogenes 130Z], gi\|74275749\|gb...	137.0	[0..12]	[140..1]
gi\|59711631, gi\|... - gi\|59711631\|ref\|YP_204407.1\| hydrolase [Vibrio fischeri ES114], gi\|59479732\|gb\|AAW85519.1\| predicted...	137.0	[0..20]	[141..17]
gi\|50084225, gi\|... - gi\|50084225\|ref\|YP_045735.1\| putative acyl-CoA thioester hydrolase [Acinetobacter sp. ADP1], gi\|4953...	136.0	[0..9]	[142..1]
gi\|7471441 - pir\|\|C75539 conserved hypothetical protein - Deinococcus radiodurans (strain R1) gi\|6457951, gi\|1... - gi\|6457951\|gb\|AAF09861.1\|AE001889_7 conserved hypothetical protein [Deinococcus radiodurans R1], gi\|...	136.0	[0..23]	[142..87]
gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21... gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21...	135.0	[0..12]	[140..1]
gi\|52424791, gi\|... - gi\|52424791\|ref\|YP_087928.1\| hypothetical protein MS0736 [Mannheimia succiniciproducens MBEL55E], gi...	134.0	[0..17]	[140..7]
gi\|113888608, gi... - gi\|78692285\|ref\|ZP_00856836.1\| cytosolic long-chain acyl-CoA thioester hydrolase family protein [She... gi\|117920180, gi... - gi\|78685722\|ref\|ZP_00850498.1\| cytosolic long-chain acyl-CoA thioester hydrolase family protein [She... gi\|113969930, gi... - gi\|82495978\|ref\|ZP_00881550.1\| cytosolic long-chain acyl-CoA thioester hydrolase family protein [She...	133.0	[0..1]	[143..1]
gi\|91187292, gi\|... - gi\|91214865\|ref\|ZP_01251838.1\| acyl CoA thioester hydrolase family protein [Psychroflexus torquis AT...	133.0	[0..18]	[140..6]
gi\|94556544, gi\|... - gi\|94986263\|ref\|YP_605627.1\| thioesterase superfamily protein [Deinococcus geothermalis DSM 11300], ...	133.0	[0..1]	[142..28]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHTLDSTRP TFSDAIEQRI NQSEARVIKA VFPSITNHHN TLFGGEALAW MDETAFIAAT  60
   61 RFCRKTLVTV SSDRIDFKKP IPAGTLAELI ARVIHVGNTS LKVEVNIFVE DMYQDHREHA 120
  121 IRGVFTFVAV DEQRHPTQVW TAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1y7uA
Description:	Crystal Structure of Acyl-Coa hydrolase from Bacillus cereus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: