YRC Public Data Repository - Protein Structure Prediction

Protein:	LFTR_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LFTR_SHEON.

Description	E-value	Query Range	Subject Range
LFTR_PSEU2 - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN...	387.0	[0..4]	[232..2]
LFTR_PSESM - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=... LFTR_PSESM - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas syringae pv. tomato GN=aat PE=3 SV=1 gi\|213925155, gi... - gi\|213970051\|ref\|ZP_03398183.1\| leucyl/phenylalanyl-tRNA--protein transferase [Pseudomonas syringae ...	386.0	[0..4]	[232..2]
LFTR_PSE14 - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 144...	383.0	[0..4]	[232..2]
LFTR_PSEPF - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=aat PE=3 ...	382.0	[0..4]	[228..2]
LFTR_PSEP1 - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=aat... tr\|I7C3W0\|I7C3W0... - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas putida (strain DOT-T1E) GN=aat PE=3 SV=... LFTR_PSEPK - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas putida (strain KT2440) GN=aat PE=3 SV=1	381.0	[0..4]	[228..2]
LFTR_PSEE4 - Leucyl/phenylalanyl-tRNA--protein transferase OS=Pseudomonas entomophila (strain L48) GN=aat PE=3 SV... gi\|95110323 - gi\|95110323\|emb\|CAK15030.1\| leucyl, phenylalanyl-tRNA--protein transferase [Pseudomonas entomophila ...	380.0	[0..4]	[228..2]
gi\|23105354, gi\|... - gi\|67155872\|ref\|ZP_00417499.1\| Leucyl/phenylalanyl-tRNA--protein transferase [Azotobacter vinelandii... LFTR_AZOVD - Leucyl/phenylalanyl-tRNA--protein transferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) ...	376.0	[0..4]	[228..2]
LFTR_SHESM - Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella sp. (strain MR-4) GN=aat PE=3 SV=1	376.0	[0..1]	[236..1]
LFTR_SHESR - Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella sp. (strain MR-7) GN=aat PE=3 SV=1	375.0	[0..1]	[236..1]
LFTR_SHESW - Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella sp. (strain W3-18-1) GN=aat PE=3 SV=1 LFTR_SHEPC - Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-45...	375.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLSFLNHE FEAFPSPELA LTDPNGLLAI GGDLRPDRLL TAYYHGIFPW FNAEDPILWW  60
   61 SPDPRAIFIP GQVNISTSLR KYLKKQPWRF TINHAFTDVM AGCAQPRRKQ AGTWITHEIQ 120
  121 MAYRELHHNG HAHSIEVWQG ERLIGGLYGL AIGQVFCGES MFHRETNASK AAMAVLQQHL 180
  181 IKMNFKLIDA QVMNPHLESL GAKALKRADF IQLLTQFRDD AVNPAAWIPS EVFLEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	2cxaA
Description:	Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.34977492703662	bayes_pls_golite062009
transferase activity	1.85190002724385	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.75772333794819	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.63399963366073	bayes_pls_golite062009
acyltransferase activity	1.60091210227059	bayes_pls_golite062009
N-acyltransferase activity	1.18143103040425	bayes_pls_golite062009
acetyltransferase activity	1.12147423121182	bayes_pls_golite062009
N-acetyltransferase activity	0.796917859235554	bayes_pls_golite062009
hydrolase activity	0.222474480045145	bayes_pls_golite062009
peptidase activity	0.0670319393098424	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: