YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374131, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374131, gi|....

Description	E-value	Query Range	Subject Range
gi\|78505488, gi\|... - gi\|78686728\|ref\|ZP_00851491.1\| Methionine sulfoxide reductase A [Shewanella sp. ANA-3], gi\|78505488\|...	431.0	[0..1]	[300..1]
gi\|82404928, gi\|... - gi\|82497094\|ref\|ZP_00882654.1\| Methionine sulfoxide reductase A [Shewanella sp. MR-4], gi\|82404928\|g...	429.0	[0..1]	[300..1]
gi\|114047756, gi... - gi\|78691011\|ref\|ZP_00855644.1\| Methionine sulfoxide reductase A [Shewanella sp. MR-7], gi\|78509604\|g...	427.0	[0..1]	[300..1]
gi\|126637815, gi... - gi\|78368498\|ref\|ZP_00838725.1\| Peptide methionine sulfoxide reductase [Shewanella sp. PV-4], gi\|7835...	423.0	[0..1]	[298..1]
gi\|126174083, gi... - gi\|68543789\|ref\|ZP_00583480.1\| Peptide methionine sulfoxide reductase [Shewanella baltica OS155], gi...	418.0	[0..1]	[300..1]
gi\|160860528, gi... - gi\|160875006\|ref\|YP_001554322.1\| bifunctional methionine sulfoxide reductase B/A protein [Shewanella...	416.0	[0..1]	[300..1]
gi\|78221446, gi\|... - gi\|78221446\|ref\|YP_383193.1\| bifunctional methionine sulfoxide reductase B/A protein [Geobacter meta...	412.0	[0..2]	[284..13]
gi\|124549371, gi... - gi\|124549371\|ref\|ZP_01707631.1\| peptide methionine sulfoxide reductase [Shewanella putrefaciens 200]... gi\|120559168, gi... - gi\|82743776\|ref\|ZP_00906401.1\| Methionine sulfoxide reductase A [Shewanella sp. W3-18-1], gi\|8271887... gi\|77814670, gi\|... - gi\|77814670\|ref\|ZP_00813926.1\| Peptide methionine sulfoxide reductase [Shewanella putrefaciens CN-32...	412.0	[0..1]	[300..1]
gi\|119354616, gi... - gi\|67936950\|ref\|ZP_00529939.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	411.0	[0..2]	[286..53]
MSRAB_TREPA - Peptide methionine sulfoxide reductase MsrB/MsrA OS=Treponema pallidum (strain Nichols) GN=msrAB PE=... gi\|7521330 - gi\|7521330\|pir\|\|G71300 probable protein-methionine-S-oxide reductase (msrA) - syphilis spirochete gi\|189025859, gi... - gi\|189025859\|ref\|YP_001933631.1\| protein-methionine-S-oxide reductase [Treponema pallidum subsp. pal... MSAB_TREPA, MSRA... - Peptide methionine sulfoxide reductase msrB/msrA OS=Treponema pallidum GN=msrAB PE=3 SV=1, (O83641) ...	409.0	[0..1]	[292..5]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLTDFERY VIEEKGTERP FSGQYYQHDA KGVYLCKKCH TPLYRSEDKF NAHCGWPAFD  60
   61 DEIPGAVSRH IDADGRRTEI VCSQCGGHLG HVFEGEFLTP KNIRHCV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.09691
Match:	1xm0A
Description:	Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
cation binding	0.491281675380108	bayes_pls_golite062009
metal ion binding	0.491281675380108	bayes_pls_golite062009
ion binding	0.484162333942196	bayes_pls_golite062009
zinc ion binding	0.32394167601451	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [108-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSVSMLFKAQ DEAEDIAPKH AFATFGAGCF WCVEAIFKSL KGVLNVRSGY SGGEASDADY  60
   61 KSVCSGQTGH AEVVHIEFDP EQIAFTTLLQ VLFESHDPTT LNRQGNDKGP QYRSVVFAHD 120
  121 ATQVDEANAM IAKLTEARVF DAPIVTQVVA FESFYPAEAY HNDYFALHGE QPYCQIVVRP 180
  181 KVEKIRALFA ELQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2gt3A
Description:	No description for 2gt3A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
protein binding	0.0950083680136139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: