YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374075, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374075, gi|....

Description	E-value	Query Range	Subject Range
gi\|219992970, gi... - gi\|89209726\|ref\|ZP_01188121.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Halothermothri...	147.0	[0..1]	[90..72]
gi\|111143364 - gi\|111143364\|gb\|ABH06550.1\| methylated-DNA-protein cysteine S-methyltransferase [Thermoanaerobacter ...	146.0	[0..7]	[94..59]
gi\|18144000, gi\|... - gi\|18309324\|ref\|NP_561258.1\| methylated-DNA-protein-cystein methyltransferase [Clostridium perfringe...	146.0	[0..1]	[91..69]
gi\|110673321, gi... - gi\|110798674\|ref\|YP_694786.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Clostridium per...	146.0	[0..1]	[91..67]
gi\|167422074, gi... - gi\|167422074\|ref\|ZP_02313827.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|167049709, gi... - gi\|167400856\|ref\|ZP_02306362.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|167469355 - gi\|167469355\|ref\|ZP_02334059.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|162353502, gi... - gi\|77636210\|ref\|ZP_00798286.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|167056065, gi... - gi\|167424878\|ref\|ZP_02316631.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|229837816, gi... - gi\|229837816\|ref\|ZP_04457975.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|117673479, gi... - gi\|77629295\|ref\|ZP_00791881.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|186895605, gi... - gi\|186895605\|ref\|YP_001872717.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pseudo... gi\|229894976, gi... - gi\|229894976\|ref\|ZP_04510154.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|169750716, gi... - gi\|170024182\|ref\|YP_001720687.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pseudo... gi\|229898377, gi... - gi\|229898377\|ref\|ZP_04513524.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|108811922, gi... - gi\|229902223\|ref\|ZP_04517344.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|165927233, gi... - gi\|165927233\|ref\|ZP_02223065.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|165938557, gi... - gi\|89104628\|ref\|ZP_01177166.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|166208125, gi... - gi\|166210945\|ref\|ZP_02236980.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|108807643, gi... - gi\|108807643\|ref\|YP_651559.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersinia ... gi\|165990426, gi... - gi\|166010724\|ref\|ZP_02231622.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|149292201, gi... - gi\|149365788\|ref\|ZP_01887823.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersini... gi\|145209842, gi... - gi\|145598146\|ref\|YP_001162222.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis... gi\|21958968, gi\|... - gi\|22126019\|ref\|NP_669442.1\| O-6-alkylguanine-DNA/cysteine-protein methyltransferase [Yersinia pesti... gi\|25286148 - pir\|\|AD0280 methylated-DNA-[protein]-cysteine S-methyltransferase (EC 2.1.1.63) [imported] - Yersini... gi\|115348002, gi... - gi\|218929391\|ref\|YP_002347266.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersin... gi\|51589827, gi\|... - gi\|51596545\|ref\|YP_070736.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersinia p... Q66AB1\|Q66AB1_YERPS - Putative methylated-DNA--protein-cysteine methyltransferase - Yersinia pseudotuberculosis	146.0	[0..5]	[91..83]
gi\|71280774, gi\|... - gi\|71280774\|ref\|YP_266923.1\| methylated-DNA--protein-cysteine methyltransferase [Colwellia psychrery...	145.0	[0..1]	[95..66]
gi\|167036637, gi... - gi\|76796157\|ref\|ZP_00778524.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Thermoanaeroba... gi\|114845299, gi... - gi\|167039287\|ref\|YP_001662272.1\| methylated-DNA--protein-cysteine methyltransferase [Thermoanaerobac... gi\|242232317, gi... - gi\|242256119\|ref\|ZP_04801015.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte... gi\|241903601, gi... - gi\|241903601\|ref\|ZP_04788322.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte...	145.0	[0..7]	[94..70]
gi\|32034034 - gi\|32034034\|ref\|ZP_00134278.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Actinobac... gi\|126097202, gi... - gi\|126208410\|ref\|YP_001053635.1\| methylated-DNA--protein-cysteine S-methyltransferase [Actinobacillu...	145.0	[0..4]	[101..81]
gi\|28203530, gi\|... - gi\|28211090\|ref\|NP_782034.1\| methylated-DNA--protein-cysteine methyltransferase [Clostridium tetani ...	145.0	[0..1]	[90..65]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	144.0	[0..4]	[91..69]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHTQGAALS PMAKIWHIVA MIPLGKVSSY GKVADFAGLP GRARYVSKAL KSAPEHLSLP  60
   61 WHRVLNSQGK ISFDKHSASF QEQMELLRLE GVTVNCGKVD LSECEWQPDM ATLVMSIPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.81641972619245	bayes_pls_golite062009
S-methyltransferase activity	2.66007025371147	bayes_pls_golite062009
transferase activity	1.93166534470568	bayes_pls_golite062009
catalytic activity	1.90838528948382	bayes_pls_golite062009
DNA binding	1.54553435062678	bayes_pls_golite062009
nucleic acid binding	1.49720271661049	bayes_pls_golite062009
binding	1.30758209326705	bayes_pls_golite062009
transcription regulator activity	1.26332746912934	bayes_pls_golite062009
methyltransferase activity	1.14625481859451	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.13184530961695	bayes_pls_golite062009
transcription factor activity	0.99095733801135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: