YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374068, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	661 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374068, gi|....

Description	E-value	Query Range	Subject Range
gi\|82495744, gi\|... - gi\|82495744\|ref\|ZP_00881318.1\| 3-phytase [Shewanella sp. MR-4], gi\|82406336\|gb\|EAP47002.1\| 3-phytase...	779.0	[0..16]	[660..8]
gi\|78505796, gi\|... - gi\|78686478\|ref\|ZP_00851245.1\| 3-phytase [Shewanella sp. ANA-3], gi\|78505796\|gb\|EAP19322.1\| 3-phytas...	767.0	[0..16]	[660..8]
gi\|114047388, gi... - gi\|78690491\|ref\|ZP_00855136.1\| 3-phytase [Shewanella sp. MR-7], gi\|78510098\|gb\|EAP23475.1\| 3-phytase...	760.0	[0..16]	[660..8]
gi\|90023639, gi\|... - gi\|90023639\|ref\|YP_529466.1\| 3-phytase [Saccharophagus degradans 2-40], gi\|89953239\|gb\|ABD83254.1\| 3...	715.0	[0..25]	[660..44]
tr\|Q880D0\|Q880D0... - Phytase domain protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_3241 PE=4 SV=1 gi\|28870406, gi\|... - gi\|28870406\|ref\|NP_793025.1\| phytase domain-containing protein [Pseudomonas syringae pv. tomato str....	678.0	[0..72]	[660..57]
gi\|25400651 - pir\|\|H87409 3-phytase, fusion, probable [imported] - Caulobacter crescentus gi\|13422632, gi\|... - gi\|16125544\|ref\|NP_420108.1\| 3-phytase, fusion, putative [Caulobacter crescentus CB15], gi\|13422632\|... gi\|221234290, gi... - gi\|221234290\|ref\|YP_002516726.1\| 3-phytase/6-phytase [Caulobacter crescentus NA1000], gi\|220963462\|g...	671.0	[0..36]	[660..29]
gi\|71736579, gi\|... - gi\|71736579\|ref\|YP_275170.1\| phytase domain-containing protein [Pseudomonas syringae pv. phaseolicol...	639.0	[0..72]	[660..57]
gi\|23103251 - ref\|ZP_00089736.1\| COG4247: 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Azotobacter v... gi\|226942653, gi... - gi\|67157532\|ref\|ZP_00418781.1\| 3-phytase [Azotobacter vinelandii AvOP], gi\|67085440\|gb\|EAM04914.1\| 3...	639.0	[0..77]	[660..61]
gi\|70731075, gi\|... - gi\|70731075\|ref\|YP_260816.1\| phytase domain-containing protein [Pseudomonas fluorescens Pf-5], gi\|68...	570.0	[0..64]	[660..50]
gi\|56731737 - gi\|56731737\|gb\|AAW28542.1\| phytase [Bacillus amyloliquefaciens] PHYC_BACIU - 3-phytase OS=Bacillus subtilis GN=phyC PE=1 SV=1 gi\|170774078 - gi\|170774078\|gb\|ACB36651.1\| phytase [Paenibacillus polymyxa]	466.0	[0..308]	[661..7]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPLIYFRE HYGSIIQKIT LTLFGVMGIH ASSLAQTPYS IAAHKGSQAQ PLVFAANGSS  60
   61 TPTAPQNPNT PAWLWVSEKQ GLMLQTLPTA DNTPMPAAAT LVKGEFELLA FSDPYALTLD 120
  121 RRADRIRPIM LKQIEGNVAT NVLPLLPMAS FEINWICIQP RPQDGNIYVW FGSEDGYSEQ 180
  181 WLLGDAGHFV PKKMRRQAIP VNSTSCAIDG DTLFVSEGEA GVWQFDASPF ADNSAKLILA 240
  241 SPDNDIAGMQ VINGKLLLSN KKGEITLDKQ AIANYDLGKV QGFSGYLNGT STNRAIQLAL 300
  301 YDDKTDQYLL TQAALPAALT KAG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.85
Match:	1qlgA
Description:	Thermostable phytase (3-phytase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.10300837435158	bayes_pls_golite062009
phosphatase activity	0.553889281087051	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.427251884409197	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [324-661]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKPSDNIIEI PAWVESASSD RPGDTMDDPA IWVHPTQPEH SLVLGTNKRW GLLSFNMRGE  60
   61 QVQALPSGRI NNVDLRQQVM LGGKKRDIAV ATLRDNDSLA FYEINPQGKI VEYPNQATDL 120
  121 VDIYGMCLYQ DADNLYVFAN EKSGRIAQYR VDWQANGPSI KLLRNIHTPS QVEGCVADET 180
  181 QHALFIGEED KGIWRFNAKP NADTQGELII KAEGDLVADV EGIALYLGAQ IQGQKQDLLV 240
  241 VSSQGNNSYI LYQAKPPYAQ VGRFRIGMNL NGVENGHETS IDASSETDGL AVTHLSVGKG 300
  301 AWQQGMLVVQ DGHNHLPDNN QSFKWLPWSS IVEKISLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	1pooA
Description:	Thermostable phytase (3-phytase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.13806785143726	bayes_pls_golite062009
phosphatase activity	0.8249870164197	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.68177897330004	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.0737864418011298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: