YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374033, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	490 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374033, gi|....

Description	E-value	Query Range	Subject Range
gi\|114047425, gi... - gi\|114047425\|ref\|YP_737975.1\| glucose-6-phosphate 1-dehydrogenase [Shewanella sp. MR-7], gi\|11388886... gi\|113885067, gi... - gi\|82498013\|ref\|ZP_00883531.1\| Glucose-6-phosphate dehydrogenase [Shewanella sp. MR-4], gi\|82403981\|...	711.0	[0..1]	[490..1]
gi\|78504027, gi\|... - gi\|78688227\|ref\|ZP_00852940.1\| Glucose-6-phosphate dehydrogenase [Shewanella sp. ANA-3], gi\|78504027...	709.0	[0..1]	[490..1]
gi\|119767447, gi... - gi\|68548046\|ref\|ZP_00587566.1\| Glucose-6-phosphate dehydrogenase [Shewanella amazonensis SB2B], gi\|6...	708.0	[0..1]	[490..1]
gi\|124507706, gi... - gi\|124549765\|ref\|ZP_01707828.1\| glucose-6-phosphate 1-dehydrogenase [Shewanella putrefaciens 200], g... gi\|120598950, gi... - gi\|82740664\|ref\|ZP_00903401.1\| Glucose-6-phosphate dehydrogenase [Shewanella sp. W3-18-1], gi\|827220...	708.0	[0..1]	[490..1]
gi\|77816083, gi\|... - gi\|77816083\|ref\|ZP_00815291.1\| Glucose-6-phosphate dehydrogenase [Shewanella putrefaciens CN-32], gi...	707.0	[0..1]	[490..1]
gi\|68518771, gi\|... - gi\|68543517\|ref\|ZP_00583219.1\| Glucose-6-phosphate dehydrogenase [Shewanella baltica OS155], gi\|6851... gi\|151365272, gi... - gi\|153000654\|ref\|YP_001366335.1\| glucose-6-phosphate 1-dehydrogenase [Shewanella baltica OS185], gi\|... gi\|160875288, gi... - gi\|160875288\|ref\|YP_001554604.1\| glucose-6-phosphate 1-dehydrogenase [Shewanella baltica OS195], gi\|...	706.0	[0..1]	[490..1]
gi\|69941835, gi\|... - gi\|91793433\|ref\|YP_563084.1\| glucose-6-phosphate 1-dehydrogenase [Shewanella denitrificans OS217], g...	702.0	[0..1]	[490..1]
gi\|126638271, gi... - gi\|78366538\|ref\|ZP_00836817.1\| Glucose-6-phosphate dehydrogenase [Shewanella sp. PV-4], gi\|78361328\|...	697.0	[0..1]	[490..1]
G6PD_CRIGR - Glucose-6-phosphate 1-dehydrogenase OS=Cricetulus griseus GN=G6PD PE=2 SV=3	696.0	[0..6]	[489..27]
G6PD_RAT - Glucose-6-phosphate 1-dehydrogenase OS=Rattus norvegicus GN=G6pdx PE=1 SV=3	694.0	[0..6]	[489..27]

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Predicted Domain #1

Region A:
Residues: [1-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTTSGAKA CDFVLFGTKG DLARRKLLPS LYQLDKAELL DKDTKVIGVA KDEFSQDEYR  60
   61 DLVILALKTF VKEPLCEDTL NRFVSRCYYV GTNFTESAGY GAFHELLKPE ERVMVSYFAT 120
  121 PPSIFGDICR CLHEQNLIHS DSRVVLEKPI GSDLASSRII NDQVSAYFKE SQVYRIDHYL 180
  181 GKETVQNLIA LRFANSLFAS KWDNRTIDHV QITVAEEVGI EGRWGYFDKA GQMRDMIQNH 240
  241 LLQVLTLVAM DPPVNLDADS IRDEKVKVLK SLRPINADNV YENTVRGQYS AGFLKGSPVP 300
  301 GYLEEEGANV QSHTETFVAL RVDIDNWRWA GVPFYLRSGK RMPFKSSEIV VYFKNPPHNL 360
  361 YRSSYRNLPP NKLTIRLQPH EGVEIQMMNK VPGLEQKQRL QTTKLDLSFS DTFKNERIAD 420
  421 AYERLLLEAM LGNQALFVRR DEVEQAWTWV DGIIQAWEQS NEKPKPYPAG TWGPVASVAL 480
  481 ITKDGRSWDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2bh9A
Description:	X-RAY STRUCTURE OF A DELETION VARIANT OF HUMAN GLUCOSE 6-PHOSPHATE DEHYDROGENASE COMPLEXED WITH STRUCTURAL AND COENZYME NADP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits