YRC Public Data Repository - Protein Structure Prediction

Protein:	KDNB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDNB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|114845300, gi... - gi\|167039286\|ref\|YP_001662271.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Thermoanaeroba...	337.0	[0..3]	[351..467]
gi\|241903602, gi... - gi\|241903602\|ref\|ZP_04788323.1\| iron-containing alcohol dehydrogenase [Thermoanaerobacter brockii su... gi\|76588428, gi\|... - gi\|76796158\|ref\|ZP_00778525.1\| Iron-containing alcohol dehydrogenase [Thermoanaerobacter ethanolicus...	336.0	[0..3]	[351..467]
gi\|77995475, gi\|... - gi\|78043360\|ref\|YP_359772.1\| putative lactaldehyde reductase [Carboxydothermus hydrogenoformans Z-29...	335.0	[0..1]	[355..1]
gi\|111143367 - gi\|111143367\|gb\|ABH06551.1\| alcohol/aldehyde dehydrogenase [Thermoanaerobacter ethanolicus]	333.0	[0..3]	[351..467]
gi\|68053559, gi\|... - gi\|68053559\|ref\|ZP_00537724.1\| Iron-containing alcohol dehydrogenase [Exiguobacterium sibiricum 255-...	330.0	[0..2]	[355..457]
gi\|46143771 - gi\|46143771\|ref\|ZP_00134229.2\| COG1012: NAD-dependent aldehyde dehydrogenases [Actinobacillus pleuro...	328.0	[0..2]	[354..464]
gi\|89210581, gi\|... - gi\|89210581\|ref\|ZP_01188969.1\| Iron-containing alcohol dehydrogenase:Aldehyde dehydrogenase [Halothe...	325.0	[0..3]	[352..470]
gi\|30022446, gi\|... - gi\|30022446\|ref\|NP_834077.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus cereus AT... gi\|228653768, gi... - gi\|229129651\|ref\|ZP_04258619.1\| Alcohol dehydrogenase, iron-containing [Bacillus cereus BDRD-Cer4], ...	324.0	[0..2]	[348..457]
gi\|47556587, gi\|... - gi\|47566557\|ref\|ZP_00237379.1\| aldehyde-alcohol dehydrogenase [Bacillus cereus G9241], gi\|47556587\|g...	323.0	[0..2]	[354..328]
gi\|42739428, gi\|... - gi\|42783499\|ref\|NP_980746.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus cereus AT...	322.0	[0..2]	[354..457]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKNFKVVE KMIFGRGSFV QLDDVLAAQR KADDDFVVFL VDDVHQGKPL EARIPVKAQD  60
   61 LLIWVNVDEE PSTIQIDALT EQVQAFNGKL PVSVVGLGGG STMDVAKAVS LMLTNPGGSA 120
  121 MYQGWDLIKK PAVHHIGIPT ISGTGAEASR TAVLCGPVRK LGLNSDYTVF DQIIMDSELI 180
  181 DGVETDQWFY TGMDCYIHCV ESLEGTFLNE FSKAYAEKAM DLCRQVYLED HPEKDDKLMM 240
  241 ASFMGGMSIA YSQVGACHAV SYGLSYILGY HHGIGNCIAF DVLEEFYPEG VAEFRLMMKK 300
  301 HNITLPKNIC KDLPDETIAK MVAVTKSMGP LWANVYGPTW EEKVTDEMLT ALFRRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1rrmA
Description:	Crystal Structure of Lactaldehyde reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alcohol dehydrogenase (NAD) activity	4.20847254363796	bayes_pls_golite062009
alcohol dehydrogenase activity, iron-dependent	3.92605598906232	bayes_pls_golite062009
oxidoreductase activity	2.97854088186835	bayes_pls_golite062009
catalytic activity	2.74401602170192	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	2.4403567544219	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.78438115520218	bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity	1.22223073730111	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: