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View Structure Prediction Details

Protein: SYD_SHEON
Organism: Shewanella oneidensis MR-1
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYD_SHEON.

Description E-value Query
Range		 Subject
Range
SYD_SHESR - Aspartate--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=aspS PE=3 SV=1
 649.0 [0..1] [591..1]
SYD_SHESA - Aspartate--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=aspS PE=3 SV=1
 648.0 [0..1] [591..1]
SYD_SHESM - Aspartate--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=aspS PE=3 SV=1
 648.0 [0..1] [591..1]
SYD_SHESW - Aspartate--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=aspS PE=3 SV=1
 643.0 [0..1] [590..1]
SYD_SHEB5 - Aspartate--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=aspS PE=3 SV=1
 643.0 [0..1] [591..1]
SYD_SHEPC - Aspartate--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=aspS PE=3 SV=1
 642.0 [0..1] [590..1]
SYD_SHEDO - Aspartate--tRNA ligase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=asp...
 637.0 [0..1] [591..1]
SYD_SHEAM - Aspartate--tRNA ligase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=aspS PE=3 SV=1
 632.0 [0..1] [591..1]
SYD_SHEFN - Aspartate--tRNA ligase OS=Shewanella frigidimarina (strain NCIMB 400) GN=aspS PE=3 SV=1
 629.0 [0..1] [591..1]
gi|89080888, gi|... - gi|89094833|ref|ZP_01167766.1| aspartyl-tRNA synthetase [Oceanospirillum sp. MED92], gi|89080888|gb|...
 628.0 [0..1] [587..1]

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Predicted Domain #1
Region A:
Residues: [1-591] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSHYCGDVN KSHVGQEVTL VGWVNRSRDL GGVVFLDLRD REGLVQVVYD PDLPEVFNVA  60
   61 STLRAEFCVQ VKGVVRARPD SQVNAQMKTG EIEVLGKALT IINSSEPLPL SLDNYQNNSE 120
  121 EQRLKYRYLD LRRPEMAQRL MFRAKVTSAV RRFLDSNGFL DIETPILTKA TPEGARDYLV 180
  181 PSRTYKGQFF ALPQSPQLFK QLLMMSGFDR YYQIVKCFRD EDLRADRQPE FTQIDIETSF 240
  241 MTSEQVMNKT EEMMRGLFLE MLNVDLGEFP RMTYNEAMRR FGSDKPDLRN PLELVDVADL 300
  301 LKDVEFAVFS GPANDEEGRV AALRIPGGAS LSRKQIDDYT KFVGIYGAKG LAWMKLNDLT 360
  361 QGLEGIQSPV LKFLNENIVN EIINRTGAQT GDIILFGADQ ATVVAESMGA LRLKAGEDFN 420
  421 LLEGQWRPLW VVDFPMFEKI NGSFHAVHHP FTAPRGVTPQ ELEANPANRV SDAYDMVLNG 480
  481 CELGGGSVRI HNQEMQSAVF RILGITDEEA KEKFGFLLEA LRYGTPPHAG LAFGLDRIIM 540
  541 LMTGASSIRD VMAFPKTTTA ACPLTNAPGF ANPQQLAELG IAVVKTAKTE D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 176.0
Match: 1eqrA
Description: Aspartyl-tRNA synthetase (AspRS); Prokaryotic AspRS, insert domain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle