YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348405, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348405, gi|....

Description	E-value	Query Range	Subject Range
gi\|110615753, gi... - gi\|110806205\|ref\|YP_689725.1\| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5... gi\|24052672, gi\|... - ref\|NP_708125.1\| ribonucleoside diphosphage reductase 1, beta subunit, B2 [Shigella flexneri 2a str....	436.0	[0..1]	[376..78]
gi\|226901077, gi... - gi\|237704711\|ref\|ZP_04535192.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3... gi\|117624429, gi... - gi\|117624429\|ref\|YP_853342.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli AP...	427.0	[0..1]	[376..45]
gi\|75512711 - gi\|75512711\|ref\|ZP_00735213.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli 536... gi\|75196277 - gi\|75196277\|ref\|ZP_00706347.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli HS] gi\|217327202, gi... - gi\|217327202\|ref\|ZP_03443285.1\| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli... gi\|189403970, gi... - gi\|189403970\|ref\|ZP_02786340.2\| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli...	425.0	[0..1]	[376..18]
gi\|194424837, gi... - gi\|83588221\|ref\|ZP_00926846.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli 101... gi\|75238026 - gi\|75238026\|ref\|ZP_00722031.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli E11... gi\|75211646, gi\|... - gi\|75211646\|ref\|ZP_00711725.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli B17...	425.0	[0..1]	[376..18]
gi\|30041924, gi\|... - gi\|30063669\|ref\|NP_837840.1\| ribonucleotide-diphosphate reductase beta subunit [Shigella flexneri 2a... gi\|193068232, gi... - gi\|193068232\|ref\|ZP_03049196.1\| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli... gi\|56480071, gi\|... - gi\|56480071\|ref\|NP_708125.2\| ribonucleotide-diphosphate reductase beta subunit [Shigella flexneri 2a...	425.0	[0..1]	[376..14]
gi\|12516573, gi\|... - gi\|15802782\|ref\|NP_288809.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O15... gi\|75177969, gi\|... - gi\|75177969\|ref\|ZP_00698031.1\| COG0208: Ribonucleotide reductase, beta subunit [Shigella boydii BS51... gi\|81241792, gi\|... - gi\|82777644\|ref\|YP_403993.1\| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae... gi\|81245931, gi\|... - gi\|82544520\|ref\|YP_408467.1\| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb22... gi\|254593526, gi... - gi\|254794126\|ref\|YP_003078963.1\| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like... gi\|238863475, gi... - gi\|238901409\|ref\|YP_002927205.1\| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like... gi\|218355852, gi... - gi\|218548311\|ref\|YP_002382102.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia ferg... gi\|218432862, gi... - gi\|218705765\|ref\|YP_002413284.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... EG10661 - ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein / Ribonucleoside-diphosp... gi\|169889688, gi... - gi\|170081853\|ref\|YP_001731173.1\| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like... gi\|188495860, gi... - gi\|188495860\|ref\|ZP_03003130.1\| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli... gi\|195935609 - gi\|195935609\|ref\|ZP_03080991.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ... gi\|157067398, gi... - gi\|157161718\|ref\|YP_001459036.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... RIR2_ECOLI - Ribonucleoside-diphosphate reductase 1 subunit beta (EC 1.17.4.1) (Ribonucleotide reductase 1) (B2 p... gi\|89109052, gi\|... - gi\|89109052\|ref\|AP_002832.1\| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Es... RIR2_ECO57 - Ribonucleoside-diphosphate reductase 1 subunit beta OS=Escherichia coli O157:H7 GN=nrdB PE=3 SV=2 gi\|15832372, gi\|... - gi\|15832372\|ref\|NP_311145.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O15... EG10661 - ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein / Ribonucleoside-diphosp...	424.0	[0..1]	[376..1]
gi\|218559152, gi... - gi\|218559152\|ref\|YP_002392065.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|218554798, gi... - gi\|218554798\|ref\|YP_002387711.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|218370692, gi... - gi\|218700706\|ref\|YP_002408335.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|218352573, gi... - gi\|218695841\|ref\|YP_002403508.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|26248623, gi\|... - gi\|26248623\|ref\|NP_754663.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT... gi\|227887293, gi... - gi\|227887293\|ref\|ZP_04005098.1\| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli... gi\|242377869, gi... - gi\|251785596\|ref\|YP_002999900.1\| hypothetical protein B21_02120 [Escherichia coli BL21], gi\|24237786... gi\|254289007, gi... - gi\|254289007\|ref\|YP_003054755.1\| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli... gi\|253974147, gi... - gi\|254162246\|ref\|YP_003045354.1\| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli... gi\|110642443, gi... - gi\|110642443\|ref\|YP_670173.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 53... gi\|161485800 - gi\|161485800\|ref\|NP_708125.3\| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2... gi\|194418416, gi... - gi\|194433322\|ref\|ZP_03065602.1\| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysente... gi\|161486465 - gi\|161486465\|ref\|NP_837840.2\| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2... gi\|215487452, gi... - gi\|215487452\|ref\|YP_002329883.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|91211528, gi\|... - gi\|91211528\|ref\|YP_541514.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI... gi\|209919687, gi... - gi\|209919687\|ref\|YP_002293771.1\| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli... gi\|74312755, gi\|... - gi\|74312755\|ref\|YP_311174.1\| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss04... gi\|75230375, gi\|... - gi\|75230375\|ref\|ZP_00716865.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli B7A... gi\|75243050, gi\|... - gi\|75243050\|ref\|ZP_00726756.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli F11... gi\|157157492, gi... - gi\|75187024\|ref\|ZP_00700291.1\| COG0208: Ribonucleotide reductase, beta subunit [Escherichia coli E24...	424.0	[0..1]	[376..1]
gi\|205344845, gi... - gi\|205344845\|gb\|EDZ31609.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... lcl\|NC_016856.1_... - [gene=nrdB] [protein=ribonucleotide-diphosphate reductase subunit beta] [protein_id=YP_005238349.1] ... gi\|168466025, gi... - gi\|195631367\|gb\|EDX49927.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|205349363, gi... - gi\|205349363\|gb\|EDZ35994.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|205338588, gi... - gi\|205338588\|gb\|EDZ25352.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|197211340, gi... - gi\|197247637\|ref\|YP_002147234.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella ente... RIR2_SALTY - Ribonucleoside-diphosphate reductase 1 subunit beta OS=Salmonella typhimurium GN=nrdB PE=3 SV=3 gi\|194735273, gi... - gi\|194735273\|ref\|YP_002115349.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella ente... gi\|194449379, gi... - gi\|194449379\|ref\|YP_002046332.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enter... gi\|194401240, gi... - gi\|194442577\|ref\|YP_002041539.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella ente... gi\|168237293, gi... - gi\|197289678\|gb\|EDY29041.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|167992612, gi... - gi\|205329222\|gb\|EDZ15986.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|205325266, gi... - gi\|205325266\|gb\|EDZ13105.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica ... gi\|161613001, gi... - gi\|161613001\|ref\|YP_001586966.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enter... gi\|204929071, gi... - gi\|204929071\|ref\|ZP_03220214.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enter... gi\|200387602, gi... - gi\|200387602\|ref\|ZP_03214214.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enter... gi\|198242288, gi... - gi\|198242288\|ref\|YP_002216347.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella ente... gi\|197240760, gi... - gi\|197262505\|ref\|ZP_03162579.1\| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enter... RIR2_SALTY - Ribonucleoside-diphosphate reductase 1 subunit beta OS=Salmonella typhimurium (strain LT2 / SGSC1412... gi\|224583238, gi... - gi\|224583238\|ref\|YP_002637036.1\| ribonucleotide-diphosphate reductase beta subunit [Salmonella enter... RIR2_SALTY - Ribonucleoside-diphosphate reductase 1 subunit beta OS=Salmonella typhimurium GN=nrdB PE=3 SV=3 gi\|213161593 - gi\|213161593\|ref\|ZP_03347303.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enteri... gi\|62128484, gi\|... - gi\|62180851\|ref\|YP_217268.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica ... gi\|207857697, gi... - gi\|207857697\|ref\|YP_002244348.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enter...	424.0	[0..1]	[376..1]
gi\|197361758, gi... - gi\|197361758\|ref\|YP_002141394.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enter... gi\|56127082, gi\|... - gi\|56412825\|ref\|YP_149900.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica ...	423.0	[0..1]	[376..1]
gi\|16761204 - gi\|16761204\|ref\|NP_456821.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica ... gi\|25285831, gi\|... - gi\|25285831\|pir\|\|AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica sub... gi\|29136727, gi\|... - gi\|29141101\|ref\|NP_804443.1\| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica ...	423.0	[0..1]	[376..1]

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Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSTFCQTP NDATREPMFF GQSVNVARYD QQKYEVFEKL IEKQLSFFWR PEEVDVSRDK  60
   61 IDYNSLPDHE KHIFISNLKY QTLLDSIQGR SPNVAFLPLV SLPELETWIE TWSFSETIHS 120
  121 RSYTHIIRNI VNDPSVIFDD IVVNHEILRR ATDIAEFYDH LIKLTQIYHL LGEGTHVIDG 180
  181 EPVEVNTRTL KKALYLCMMS VNALEAIRFY VSFACSFAFA ERKLMEGNAK IIRLIARDEA 240
  241 LHLNSTQHIL TIMQGGKDDP EMGEIAIECQ QEAYNLFLKA AEQEKEWAKY LFKDGSMIGL 300
  301 NEQILCQYVE YITNQRMKSV NLPQPYAEQT NPLPWMKNWL ESDAVQVAPQ EVEVSSYLVG 360
  361 QIDAAVDSDE FLDFDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1piyA
Description:	RIBONUCLEOTIDE REDUCTASE R2 SOAKED WITH FERROUS ION AT NEUTRAL PH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	12.7205287868529	bayes_pls_golite062009
ribonucleoside-diphosphate reductase activity	12.6679910771829	bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups	12.0783326936172	bayes_pls_golite062009
class I ribonucleotide reductase activity	7.27682621818194	bayes_pls_golite062009
binding	0.998691281119878	bayes_pls_golite062009
catalytic activity	0.197328811494233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: