YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348160, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348160, gi|....

Description	E-value	Query Range	Subject Range
gi\|78504245, gi\|... - gi\|78688003\|ref\|ZP_00852731.1\| MutT/nudix family protein [Shewanella sp. ANA-3], gi\|78504245\|gb\|EAP1...	170.0	[0..1]	[194..1]
gi\|113970463, gi... - gi\|82497991\|ref\|ZP_00883510.1\| MutT/nudix family protein [Shewanella sp. MR-4], gi\|82404004\|gb\|EAP44...	170.0	[0..1]	[194..1]
gi\|78692417, gi\|... - gi\|78692417\|ref\|ZP_00856946.1\| MutT/nudix family protein [Shewanella sp. MR-7], gi\|78508179\|gb\|EAP21...	169.0	[0..1]	[194..1]
gi\|69157784, gi\|... - gi\|91793311\|ref\|YP_562962.1\| NUDIX hydrolase [Shewanella denitrificans OS217], gi\|91715313\|gb\|ABE552...	159.0	[0..1]	[192..1]
gi\|127512830, gi... - gi\|78367204\|ref\|ZP_00837476.1\| NUDIX hydrolase [Shewanella sp. PV-4], gi\|78360695\|gb\|EAP02527.1\| NUD...	153.0	[0..1]	[190..1]
gi\|14023181, gi\|... - gi\|14023181\|dbj\|BAB49788.1\| mll2727 [Mesorhizobium loti MAFF303099], gi\|13472435\|ref\|NP_104002.1\| hy...	150.0	[0..13]	[188..27]
gi\|45915852, gi\|... - gi\|69276884\|ref\|ZP_00612356.1\| NUDIX hydrolase [Mesorhizobium sp. BNC1], gi\|68191783\|gb\|EAN06438.1\| ...	149.0	[0..13]	[188..33]
gi\|225853032, gi... - gi\|225853032\|ref\|YP_002733265.1\| NUDIX hydrolase [Brucella melitensis ATCC 23457], gi\|225641397\|gb\|A... gi\|225627994, gi... - gi\|225627994\|ref\|ZP_03786030.1\| MutT/nudix family protein [Brucella ceti str. Cudo], gi\|225617157\|gb... gi\|62290438, gi\|... - gi\|62290438\|ref\|YP_222231.1\| MutT/nudix family protein [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|254697884 - gi\|254697884\|ref\|ZP_05159712.1\| NUDIX hydrolase [Brucella abortus bv. 2 str. 86/8/59] gi\|254694229 - gi\|254694229\|ref\|ZP_05156057.1\| NUDIX hydrolase [Brucella abortus bv. 3 str. Tulya] gi\|254689740 - gi\|254689740\|ref\|ZP_05152994.1\| NUDIX hydrolase [Brucella abortus bv. 6 str. 870] gi\|237789244, gi... - gi\|237815946\|ref\|ZP_04594943.1\| MutT/nudix family protein [Brucella abortus str. 2308 A], gi\|2377892... gi\|254710591 - gi\|254710591\|ref\|ZP_05172402.1\| NUDIX hydrolase [Brucella pinnipedialis B2/94] gi\|254708221 - gi\|254708221\|ref\|ZP_05170049.1\| NUDIX hydrolase [Brucella pinnipedialis M163/99/10] gi\|254704807 - gi\|254704807\|ref\|ZP_05166635.1\| NUDIX hydrolase [Brucella suis bv. 3 str. 686] gi\|254702275 - gi\|254702275\|ref\|ZP_05164103.1\| NUDIX hydrolase [Brucella suis bv. 5 str. 513] gi\|254730775 - gi\|254730775\|ref\|ZP_05189353.1\| NUDIX hydrolase [Brucella abortus bv. 4 str. 292] gi\|189024668, gi... - gi\|189024668\|ref\|YP_001935436.1\| MutT/nudix family protein [Brucella abortus S19], gi\|189020240\|gb\|A... gi\|254717835 - gi\|254717835\|ref\|ZP_05179646.1\| NUDIX hydrolase [Brucella ceti M13/05/1] gi\|161619497, gi... - gi\|161619497\|ref\|YP_001593384.1\| NUDIX hydrolase [Brucella canis ATCC 23365], gi\|161336308\|gb\|ABX626... gi\|254714774 - gi\|254714774\|ref\|ZP_05176585.1\| NUDIX hydrolase [Brucella ceti M644/93/1]	149.0	[0..4]	[188..14]
gi\|90413084, gi\|... - gi\|90413084\|ref\|ZP_01221081.1\| Hypothetical MutT/nudix family protein [Photobacterium profundum 3TCK...	148.0	[0..1]	[188..2]
gi\|25526325 - pir\|\|AH3309 phosphohydrolase (mutT/nudiX family protein) BMEI0462 [imported] - Brucella melitensis (... gi\|17982372, gi\|... - gi\|17986745\|ref\|NP_539379.1\| phosphohydrolase (MUTT/NUDIX family protein) [Brucella melitensis 16M],...	148.0	[0..4]	[188..14]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTEFRLRF TLHPLAKQDP AALPHQGLRK AAVLIPLQEI DGELNLILTQ RPMHLRAHPG  60
   61 QISFPGGKIE ASDPSAIMAA LREAEEEIGL CRENVDVIGT FPAHNTFTGF EITPVVGIIK 120
  121 QDFTLRLDPG EVADCFTVPL SFFIEPRHRH RKEFLRKGRY YSVHFIPYQQ RFIWGATAAI 180
  181 IDHLCRHVSL PEEIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.97790691270817	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.544115189438	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.54377405132398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: