YRC Public Data Repository - Protein Structure Prediction

Protein:	SYN_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYN_SHEON.

Description	E-value	Query Range	Subject Range
SYN_SHESM - Asparagine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1	508.0	[0..1]	[466..1]
SYN_SHESA - Asparagine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=asnS PE=3 SV=1	506.0	[0..1]	[466..1]
SYN_SHESR - Asparagine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=asnS PE=3 SV=1	505.0	[0..1]	[466..1]
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	505.0	[0..1]	[466..1]
gi\|238728303, gi... - gi\|77979213\|ref\|ZP_00834633.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia intermedia A...	505.0	[0..1]	[466..1]
gi\|77956525 - gi\|77956525\|ref\|ZP_00820617.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia bercovieri A... gi\|238795874, gi... - gi\|77963114\|ref\|ZP_00826927.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia mollaretii A...	505.0	[0..1]	[466..1]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	504.0	[0..1]	[466..1]
SYN_SHEB5 - Asparagine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=asnS PE=3 SV=1	504.0	[0..1]	[466..1]
SYN_SHEB9 - Asparagine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=asnS PE=3 SV=1	503.0	[0..1]	[466..1]
gi\|89104665 - gi\|89104665\|ref\|ZP_01177202.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis biova...	502.0	[0..1]	[466..1]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIASVASVF KGEHAVGSTV TVRGWVRTRR DSKAGISFLA VYDGSCFNPI QGVVPNSLEN  60
   61 YDNEVLKLTA GCSVIVTGDI VESPGAGQAY ELQVTAVEVT GWVEDPDTYP MAAKRHSIEH 120
  121 LRELAHLRPR TNIIGAVARV RNCLSQAIHR FYHENGFVWV STPLITASDC EGAGEMFRVS 180
  181 TLDMENLPRT SDGKVDYDKD FFGKEAFLTV SGQLNGETYA CALSKIYTFG PTFRAENSNT 240
  241 SRHLAEFWMV EPEVAFATLN DIAGLAEGML KYAFNAVLTE RMDDLQFFAQ HVDKTVIERL 300
  301 QSFVSSDFAQ VDYTDAVEIL QKSGREFEFP VSWGIDLSSE HERYLAEEHF KAPVVVKNYP 360
  361 KDIKAFYMRL NEDGKTVAAM DVLAPGIGEI IGGSQREERL DVLDMRLEEM DLNKEDYWWY 420
  421 RDLRRYGTVP HAGFGLGFER LVSYVTGVSN IRDVIPFPRA PRTANF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits