YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347998, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	808 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347998, gi|....

Description	E-value	Query Range	Subject Range
gi\|67853729, gi\|... - gi\|67924417\|ref\|ZP_00517844.1\| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501], ...	790.0	[0..4]	[801..6]
gi\|17130039, gi\|... - gi\|17228189\|ref\|NP_484737.1\| hydrogenase maturation protein [Nostoc sp. PCC 7120], gi\|17130039\|dbj\|B... gi\|25324741 - pir\|\|AD1893 hydrogenase maturation protein [imported] - Nostoc sp. (strain PCC 7120)	778.0	[0..2]	[802..1]
gi\|78684973, gi\|... - gi\|78684973\|ref\|ZP_00849754.1\| Hydrogenase maturation protein HypF [Shewanella sp. ANA-3], gi\|785071...	775.0	[0..2]	[801..26]
gi\|113970155, gi... - gi\|82496332\|ref\|ZP_00881901.1\| Hydrogenase maturation protein HypF [Shewanella sp. MR-4], gi\|8240568...	775.0	[0..2]	[801..26]
gi\|7449699 - pir\|\|B70359 transcription regulator HypF - Aquifex aeolicus gi\|2983269, gi\|1... - gi\|2983269\|gb\|AAC06863.1\| transcriptional regulatory protein HypF [Aquifex aeolicus VF5], gi\|1560608...	772.0	[0..3]	[799..4]
gi\|75910798, gi\|... - gi\|75910798\|ref\|YP_325094.1\| hydrogenase maturation protein HypF [Anabaena variabilis ATCC 29413], g...	769.0	[0..2]	[804..1]
gi\|172083937, gi... - gi\|177649985\|ref\|ZP_02932986.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. A0174],... gi\|170704939, gi... - gi\|170704939\|ref\|ZP_02895404.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. A0389],... gi\|167637108, gi... - gi\|167637108\|ref\|ZP_02395388.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. A0193],... gi\|254761139 - gi\|254761139\|ref\|ZP_05213163.1\| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. ... gi\|165868612, gi... - gi\|165868612\|ref\|ZP_02213272.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. A0488],... gi\|254752624 - gi\|254752624\|ref\|ZP_05204660.1\| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. ... gi\|49180002, gi\|... - gi\|49186075\|ref\|YP_029327.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. Sterne], g... gi\|47503746, gi\|... - gi\|47528598\|ref\|YP_019947.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. 'Ames Ance... gi\|30257858, gi\|... - gi\|30263224\|ref\|NP_845601.1\| hydrogenase maturation protein HypF [Bacillus anthracis str. Ames], gi\|... gi\|254738308 - gi\|254738308\|ref\|ZP_05196011.1\| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. ... gi\|229603801, gi... - gi\|229603801\|ref\|YP_002867485.1\| (NiFe) hydrogenase maturation protein HypF [Bacillus anthracis str.... gi\|227813906, gi... - gi\|227813906\|ref\|YP_002813915.1\| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.... gi\|190564762, gi... - gi\|190564762\|ref\|ZP_03017683.1\| hydrogenase maturation protein HypF [Bacillus anthracis Tsiankovskii...	766.0	[0..2]	[803..7]
gi\|22652029 - gi\|22652029\|gb\|AAN03573.1\|AF381045_10 hydrogenase maturation protein HypF [Synechococcus sp. PCC 700...	758.0	[0..3]	[798..5]
gi\|71676651, gi\|... - gi\|71676651\|ref\|ZP_00674392.1\| Hydrogenase maturation protein HypF [Trichodesmium erythraeum IMS101]...	758.0	[0..1]	[804..1]
gi\|114047655, gi... - gi\|78689720\|ref\|ZP_00854378.1\| Hydrogenase maturation protein HypF [Shewanella sp. MR-7], gi\|7851088...	756.0	[0..2]	[801..26]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIERRQLHIT GIVQGVGFRP FVYRWATELQ LTGTVLNNAK GVMIELQGPS ARLDIFIQEL  60
   61 ATNPPPLARI DHISHGQLAI KLAETHFEIV Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2gv1A
Description:	No description for 2gv1A was found.

Predicted Domain #2

Region A:
Residues: [92-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDSQSDGTKD RSLAALVAVS ADKSTCQDCL DDMHNPQDRH FGYAFTNCTN CGPRYSIINA  60
   61 LPYDRHHTAM ADFAMCPDCA KAYQDPLNRR YHAQPVSCPK CGPQLSLKT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.06
Match:	2i13A
Description:	No description for 2i13A was found.

Predicted Domain #3

Region A:
Residues: [201-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKGELIALTP SLNSQDNSMA VLSAAANMLA QGHILAIKGL GGFHLMCDAR NSHAVSQLRQ  60
   61 RKQRKAKPLA VMMPSIEMAK QYVTGTEAEW QTLSSPERPI VLMQALDEHD LNPEIAPNIP 120
  121 KLGVFLPYTP LHHLLLSQFN GPLVATSANV SGEPIITDCD ALISQLGHVV DAIVDHNRPI 180
  181 LNGCDDSVVQ LIQQPNGSTP QVQVLRLARG YAPLSFPLTA P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.045757
Match:	1kk9A
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.71407687320205	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [422-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTRSILAVGA QQKNAIAFGF GANVFLSPHI GDLFSVSAEQ YFERTLATFA RLYHFSPELI  60
   61 VHDKH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [487-808]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDYAPSRWAE AQQQKSPDTQ SGTSGSIQTL SVQHHHAHVL SVMAINQYQE PVLGFSFDGT  60
   61 GLGDDGSLWG GEVLLTRLDK AERLAHFEAI SLLGGEQAIK QPVRLLLALL FEQMSLAAVQ 120
  121 ALDLPILKSL TPITLSNLHR IWQNGHTIKS SSVGRLFDAL ACALGLIDTT QFEGQAGMLI 180
  181 EAAARRADKQ HLPSLILDLP LCSSEDDPRQ VQVWCSSQLF KQLIVHITEA PLSSHRQSII 240
  241 ARAFLHSLGD AICSYAARYP SLPIALCGGV FQNQYLLEYC LSKLHLQGNI VLPNKHIPVN 300
  301 DGGIALGQLW YGIHQEANAE LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: