YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347935, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347935, gi|....

Description	E-value	Query Range	Subject Range
gi\|227081184, gi... - gi\|227081184\|ref\|YP_002809735.1\| lactoylglutathione lyase [Vibrio cholerae M66-2], gi\|227009072\|gb\|A... gi\|153829533, gi... - gi\|153829533\|ref\|ZP_01982200.1\| lactoylglutathione lyase [Vibrio cholerae 623-39], gi\|148874993\|gb\|E... gi\|229350904, gi... - gi\|229510939\|ref\|ZP_04400418.1\| lactoylglutathione lyase [Vibrio cholerae B33], gi\|229350904\|gb\|EEO1... gi\|229515396, gi... - gi\|229515396\|ref\|ZP_04404855.1\| lactoylglutathione lyase [Vibrio cholerae TMA 21], gi\|229347165\|gb\|E... gi\|9655474, gi\|1... - gi\|9655474\|gb\|AAF94171.1\| lactoylglutathione lyase [Vibrio cholerae O1 biovar El Tor str. N16961], g... gi\|227012827, gi... - gi\|227117377\|ref\|YP_002819273.1\| lactoylglutathione lyase [Vibrio cholerae O395], gi\|227012827\|gb\|AC... gi\|229357614, gi... - gi\|229505391\|ref\|ZP_04394901.1\| lactoylglutathione lyase [Vibrio cholerae BX 330286], gi\|229357614\|g... gi\|254843845, gi... - gi\|254848140\|ref\|ZP_05237490.1\| lactoylglutathione lyase [Vibrio cholerae MO10], gi\|254843845\|gb\|EET... gi\|229344775, gi... - gi\|229518060\|ref\|ZP_04407504.1\| lactoylglutathione lyase [Vibrio cholerae RC9], gi\|229344775\|gb\|EEO0... gi\|121628268, gi... - gi\|121729982\|ref\|ZP_01682399.1\| lactoylglutathione lyase [Vibrio cholerae V52], gi\|121628268\|gb\|EAX6... gi\|229371065, gi... - gi\|229608410\|ref\|YP_002879058.1\| lactoylglutathione lyase [Vibrio cholerae MJ-1236], gi\|229371065\|gb... LGUL_VIBCH - (Q9KT93) Probable lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxal...	139.0	[0..2]	[135..50]
gi\|82741782, gi\|... - gi\|82741782\|ref\|ZP_00904495.1\| Glyoxalase I [Shewanella sp. W3-18-1], gi\|82720872\|gb\|EAP55725.1\| Gly... gi\|145564887, gi... - gi\|77815744\|ref\|ZP_00814966.1\| Glyoxalase I [Shewanella putrefaciens CN-32], gi\|77809315\|gb\|EAO93717... gi\|124547237, gi... - gi\|124547237\|ref\|ZP_01706184.1\| lactoylglutathione lyase [Shewanella putrefaciens 200], gi\|124509389...	137.0	[0..1]	[136..30]
gi\|113888805, gi... - gi\|78690516\|ref\|ZP_00855161.1\| Glyoxalase I [Shewanella sp. MR-7], gi\|78510123\|gb\|EAP23500.1\| Glyoxa...	134.0	[0..1]	[136..1]
gi\|71669193, gi\|... - gi\|71677562\|ref\|ZP_00675298.1\| Glyoxalase I [Trichodesmium erythraeum IMS101], gi\|71669193\|gb\|EAO258...	133.0	[0..3]	[127..2]
gi\|78505820, gi\|... - gi\|78686502\|ref\|ZP_00851269.1\| Glyoxalase I [Shewanella sp. ANA-3], gi\|78505820\|gb\|EAP19346.1\| Glyox...	133.0	[0..1]	[136..1]
gi\|82406312, gi\|... - gi\|82495720\|ref\|ZP_00881294.1\| Glyoxalase I [Shewanella sp. MR-4], gi\|82406312\|gb\|EAP46978.1\| Glyoxa...	133.0	[0..1]	[136..1]
gi\|69163506, gi\|... - gi\|69953426\|ref\|ZP_00640556.1\| Glyoxalase I [Shewanella frigidimarina NCIMB 400], gi\|69163506\|gb\|EAN...	133.0	[0..1]	[136..1]
gi\|45441959, gi\|... - gi\|45441959\|ref\|NP_993498.1\| lactoylglutathione lyase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22125849, gi\|... - gi\|22125849\|ref\|NP_669272.1\| lactoylglutathione lyase [Yersinia pestis KIM], gi\|21958780\|gb\|AAM85523...	133.0	[0..1]	[136..13]
gi\|238719814, gi... - gi\|77961717\|ref\|ZP_00825549.1\| COG0346: Lactoylglutathione lyase and related lyases [Yersinia mollar...	132.0	[0..1]	[136..1]
gi\|53763628, gi\|... - gi\|75906364\|ref\|YP_320660.1\| glyoxalase I [Anabaena variabilis ATCC 29413], gi\|75700089\|gb\|ABA19765....	132.0	[0..3]	[127..2]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLLHTMIR VGNLERSIAF YTQVLGMKLL RTSENPEYKY SLAFVGYGEE STGQAVIELT  60
   61 YNWGTEKYDL GTGFGHIAIG DDDIYARCEA IAAAGGKVTR APGPVAGGTT EIAFVEDPDG 120
  121 YKIEFIQMKS ATQGLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1f9zA
Description:	Glyoxalase I (lactoylglutathione lyase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
lactoylglutathione lyase activity	3.91334658149719	bayes_pls_golite062009
carbon-sulfur lyase activity	1.44168339433372	bayes_pls_golite062009
catalytic activity	1.21778090213032	bayes_pls_golite062009
binding	0.78394104122898	bayes_pls_golite062009
protein binding	0.0335467332601391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: