YRC Public Data Repository - Protein Structure Prediction

Protein:	NADE_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADE_SHEON.

Description	E-value	Query Range	Subject Range
gi\|78505528, gi\|... - gi\|78686768\|ref\|ZP_00851531.1\| NAD+ synthase [Shewanella sp. ANA-3], gi\|78505528\|gb\|EAP19058.1\| NAD+...	252.0	[0..2]	[276..22]
gi\|89082243, gi\|... - gi\|89093553\|ref\|ZP_01166501.1\| NAD(+) synthetase [Oceanospirillum sp. MED92], gi\|89082243\|gb\|EAR6146...	252.0	[0..5]	[276..6]
gi\|78508317, gi\|... - gi\|78692282\|ref\|ZP_00856834.1\| NAD+ synthase [Shewanella sp. MR-7], gi\|78508317\|gb\|EAP21787.1\| NAD+ ... gi\|82498547, gi\|... - gi\|82498547\|ref\|ZP_00884036.1\| NAD+ synthase [Shewanella sp. MR-4], gi\|82403454\|gb\|EAP44186.1\| NAD+ ...	250.0	[0..2]	[276..22]
NADE_VIBPA - NH(3)-dependent NAD(+) synthetase OS=Vibrio parahaemolyticus GN=nadE PE=3 SV=1 NADE_VIBPA - NH(3)-dependent NAD(+) synthetase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN...	249.0	[0..1]	[276..1]
gi\|84385297, gi\|... - gi\|84385297\|ref\|ZP_00988329.1\| NAD(+) synthetase [Vibrio splendidus 12B01], gi\|84379894\|gb\|EAP96745....	249.0	[0..1]	[276..1]
NADE_BACHD - NH(3)-dependent NAD(+) synthetase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 734... NADE_BACHD - NH(3)-dependent NAD(+) synthetase OS=Bacillus halodurans GN=nadE PE=3 SV=1	248.0	[0..1]	[276..1]
gi\|194539825, gi... - gi\|75856650\|ref\|ZP_00764275.1\| COG0171: NAD synthase [Vibrio sp. Ex25], gi\|254229089\|ref\|ZP_04922509...	248.0	[0..1]	[276..1]
NADE_VIBVY - NH(3)-dependent NAD(+) synthetase OS=Vibrio vulnificus (strain YJ016) GN=nadE PE=3 SV=1	247.0	[0..1]	[276..1]
NADE_VIBVU - NH(3)-dependent NAD(+) synthetase OS=Vibrio vulnificus GN=nadE PE=3 SV=1 NADE_VIBVU - NH(3)-dependent NAD(+) synthetase OS=Vibrio vulnificus (strain CMCP6) GN=nadE PE=3 SV=1	247.0	[0..1]	[276..1]
gi\|126512589, gi... - gi\|153816786\|ref\|ZP_01969453.1\| NH(3)-dependent NAD(+) synthetase [Vibrio cholerae NCTC 8457], gi\|12... gi\|126519837, gi... - gi\|153822638\|ref\|ZP_01975305.1\| NH(3)-dependent NAD(+) synthetase [Vibrio cholerae B33], gi\|12651983... NADE_VIBCH - NH(3)-dependent NAD(+) synthetase OS=Vibrio cholerae GN=nadE PE=3 SV=1 NADE_VIBCH - NH(3)-dependent NAD(+) synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N... NADE_VIBCM - NH(3)-dependent NAD(+) synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=nadE PE=3 SV=1 gi\|153829640, gi... - gi\|153829640\|ref\|ZP_01982307.1\| NH(3)-dependent NAD(+) synthetase [Vibrio cholerae 623-39], gi\|14887... gi\|149741370, gi... - gi\|153825045\|ref\|ZP_01977712.1\| NAD+ synthetase [Vibrio cholerae MZO-2], gi\|149741370\|gb\|EDM55404.1\|... gi\|254846299, gi... - gi\|75830981\|ref\|ZP_00760250.1\| COG0171: NAD synthase [Vibrio cholerae MO10], gi\|254850594\|ref\|ZP_052... gi\|254223212, gi... - gi\|75823497\|ref\|ZP_00752994.1\| COG0171: NAD synthase [Vibrio cholerae RC385], gi\|254223212\|ref\|ZP_04... NADE_VIBC3 - NH(3)-dependent NAD(+) synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogaw... gi\|75820425, gi\|... - gi\|75820425\|ref\|ZP_00750473.1\| COG0171: NAD synthase [Vibrio cholerae V51], gi\|254225213\|ref\|ZP_0491... gi\|121586713, gi... - gi\|121586713\|ref\|ZP_01676496.1\| NH(3)-dependent NAD(+) synthetase [Vibrio cholerae 2740-80], gi\|1215... gi\|121629969, gi... - gi\|75816512\|ref\|ZP_00746980.1\| COG0171: NAD synthase [Vibrio cholerae V52], gi\|121727752\|ref\|ZP_0168... gi\|153222356, gi... - gi\|153222356\|ref\|ZP_01953106.1\| NH(3)-dependent NAD(+) synthetase [Vibrio cholerae MAK 757], gi\|1241...	247.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAQILREMK VLKAIEPEFE VQRRVAFIKT KLKEARSKAL VLGISGGVDS STAGRLCQLA  60
   61 INSLNSEHPE GGYQFIAVRL PYQIQKDEHE AQQACQFIQP SKLVTVNVHQ GVDGVHQATL 120
  121 SAFIDAGLTT PDAAKVDFIK GNVKARMRMI AQYELAGLVG GLVVGTDHSA ENITGFYTKW 180
  181 GDGACDLAPL FGLNKRQVRQ LAAYLGAPES LVYKAPTADL EDNKPLLEDE VALGLTYEQI 240
  241 DDFLEGKVVD KAVEEKLINI YKATQHKRQP IPTIYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2pz8A
Description:	No description for 2pz8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits