YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373509, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373509, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	252.0	[0..6]	[448..1]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	244.0	[0..6]	[447..1]
gi\|49331784, gi\|... - gi\|49480228\|ref\|YP_034908.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ...	240.0	[0..9]	[449..2]
gi\|218540301, gi... - gi\|218848250\|ref\|YP_002455135.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218540301\|gb\|AC... gi\|229164673, gi... - gi\|229164673\|ref\|ZP_04292537.1\| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi\|2... gi\|116585027, gi... - gi\|190015346\|ref\|YP_001967073.1\| sensor histidine kinase [Bacillus cereus], gi\|190015080\|ref\|YP_0019... gi\|44004552, gi\|... - gi\|44004552\|ref\|NP_982221.1\| sensor histidine kinase [Bacillus cereus ATCC 10987], gi\|42741618\|gb\|AA...	239.0	[0..9]	[447..2]
gi\|167635201, gi... - gi\|167635201\|ref\|ZP_02393517.1\| sensor histidine kinase [Bacillus anthracis str. A0442], gi\|16752946... gi\|165872713, gi... - gi\|165872713\|ref\|ZP_02217342.1\| sensor histidine kinase [Bacillus anthracis str. A0488], gi\|16471157... gi\|170667007, gi... - gi\|170689022\|ref\|ZP_02880222.1\| sensor histidine kinase [Bacillus anthracis str. A0465], gi\|17066700... gi\|167511106, gi... - gi\|167640886\|ref\|ZP_02399144.1\| sensor histidine kinase [Bacillus anthracis str. A0193], gi\|16751110... gi\|177652843, gi... - gi\|177652843\|ref\|ZP_02935216.1\| sensor histidine kinase [Bacillus anthracis str. A0174], gi\|17208187... gi\|170708472, gi... - gi\|170708472\|ref\|ZP_02898914.1\| sensor histidine kinase [Bacillus anthracis str. A0389], gi\|17012659... gi\|49177569, gi\|... - gi\|49183642\|ref\|YP_026894.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49177569\|g... gi\|227816480, gi... - gi\|227816480\|ref\|YP_002816489.1\| sensor histidine kinase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|47525929, gi\|... - gi\|47525929\|ref\|YP_017278.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|229266529, gi... - gi\|229602121\|ref\|YP_002865248.1\| sensor histidine kinase [Bacillus anthracis str. A0248], gi\|2292665... gi\|30254253, gi\|... - gi\|30260804\|ref\|NP_843181.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30254253\|gb\|... gi\|254684273 - gi\|254684273\|ref\|ZP_05148133.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|21398611, gi\|... - gi\|65318076\|ref\|ZP_00391035.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str... gi\|254722077 - gi\|254722077\|ref\|ZP_05183866.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|254738738 - gi\|254738738\|ref\|ZP_05196441.1\| sensor histidine kinase [Bacillus anthracis str. Western North Ameri... gi\|254742050 - gi\|254742050\|ref\|ZP_05199737.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254754963 - gi\|254754963\|ref\|ZP_05206997.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|190568579, gi... - gi\|190568579\|ref\|ZP_03021485.1\| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|254762306 - gi\|254762306\|ref\|ZP_05214150.1\| sensor histidine kinase [Bacillus anthracis str. Australia 94]	238.0	[0..9]	[449..2]
gi\|89155894, gi\|... - gi\|89206170\|ref\|ZP_01184732.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	236.0	[0..9]	[449..2]
gi\|51978130, gi\|... - gi\|52144661\|ref\|YP_082167.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51978130\|gb\|AAU19680...	236.0	[0..9]	[449..2]
gi\|74490416, gi\|... - gi\|75762098\|ref\|ZP_00742003.1\| Two component system histidine kinase [Bacillus thuringiensis serovar...	235.0	[0..17]	[449..19]
gi\|228640184, gi... - gi\|229143377\|ref\|ZP_04271808.1\| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24], gi\|... gi\|228657404, gi... - gi\|229126082\|ref\|ZP_04255104.1\| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4], gi\|... gi\|29894376, gi\|... - gi\|30018834\|ref\|NP_830465.1\| two component system histidine kinase [Bacillus cereus ATCC 14579], gi\|...	235.0	[0..9]	[449..2]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRLKFKKR LLTRMFLTSL SIITLVGFGL AWMVNVLHAQ NSYNEETAQL IAEIPQVAAE  60
   61 LREHDLIPDT SAWLEENNKQ ERYVIASCDE KFKQVWTSSL AVDRGLFDTC ERFNEIRNDS 120
  121 PPYYLTMADD RGYFVYLLAV EIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVHYNLLVMK DAAKLEQEYS KFSKRTYIRL AMVLALALIL LVSAAYWGMR PLVRMQNELQ  60
   61 SINQGKTKSL SEG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.5
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [217-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPVELEGVTQ ALNQLLQQSS AQQQRYQNAM NDLAHSLKTR LAAVHAITDD TSLNKQSANE  60
   61 KIMEQISQMD QLVKYQLKRA MLGRQGLKQE HTPIAPLVEQ LAQMLFKIYR DKQVQFKANI 120
  121 SANLLFPGNK GDLMELCGNL MENAFRLCIS QVQVTAHFNE QGDFELIVED DGPGVEEQLR 180
  181 QKIIQRGVRA DTQSPGQGIG LAVCDEIVSS YGGSLKIEES HLEGALFRIT IPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits