YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373509, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373509, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	252.0	[0..6]	[448..1]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	244.0	[0..6]	[447..1]
gi\|49331784, gi\|... - gi\|49480228\|ref\|YP_034908.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ...	240.0	[0..9]	[449..2]
gi\|218540301, gi... - gi\|218848250\|ref\|YP_002455135.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218540301\|gb\|AC... gi\|229164673, gi... - gi\|229164673\|ref\|ZP_04292537.1\| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi\|2... gi\|116585027, gi... - gi\|190015346\|ref\|YP_001967073.1\| sensor histidine kinase [Bacillus cereus], gi\|190015080\|ref\|YP_0019... gi\|44004552, gi\|... - gi\|44004552\|ref\|NP_982221.1\| sensor histidine kinase [Bacillus cereus ATCC 10987], gi\|42741618\|gb\|AA...	239.0	[0..9]	[447..2]
gi\|167635201, gi... - gi\|167635201\|ref\|ZP_02393517.1\| sensor histidine kinase [Bacillus anthracis str. A0442], gi\|16752946... gi\|165872713, gi... - gi\|165872713\|ref\|ZP_02217342.1\| sensor histidine kinase [Bacillus anthracis str. A0488], gi\|16471157... gi\|170667007, gi... - gi\|170689022\|ref\|ZP_02880222.1\| sensor histidine kinase [Bacillus anthracis str. A0465], gi\|17066700... gi\|167511106, gi... - gi\|167640886\|ref\|ZP_02399144.1\| sensor histidine kinase [Bacillus anthracis str. A0193], gi\|16751110... gi\|177652843, gi... - gi\|177652843\|ref\|ZP_02935216.1\| sensor histidine kinase [Bacillus anthracis str. A0174], gi\|17208187... gi\|170708472, gi... - gi\|170708472\|ref\|ZP_02898914.1\| sensor histidine kinase [Bacillus anthracis str. A0389], gi\|17012659... gi\|49177569, gi\|... - gi\|49183642\|ref\|YP_026894.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49177569\|g... gi\|227816480, gi... - gi\|227816480\|ref\|YP_002816489.1\| sensor histidine kinase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|47525929, gi\|... - gi\|47525929\|ref\|YP_017278.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|229266529, gi... - gi\|229602121\|ref\|YP_002865248.1\| sensor histidine kinase [Bacillus anthracis str. A0248], gi\|2292665... gi\|30254253, gi\|... - gi\|30260804\|ref\|NP_843181.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30254253\|gb\|... gi\|254684273 - gi\|254684273\|ref\|ZP_05148133.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|21398611, gi\|... - gi\|65318076\|ref\|ZP_00391035.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str... gi\|254722077 - gi\|254722077\|ref\|ZP_05183866.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|254738738 - gi\|254738738\|ref\|ZP_05196441.1\| sensor histidine kinase [Bacillus anthracis str. Western North Ameri... gi\|254742050 - gi\|254742050\|ref\|ZP_05199737.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254754963 - gi\|254754963\|ref\|ZP_05206997.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|190568579, gi... - gi\|190568579\|ref\|ZP_03021485.1\| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|254762306 - gi\|254762306\|ref\|ZP_05214150.1\| sensor histidine kinase [Bacillus anthracis str. Australia 94]	238.0	[0..9]	[449..2]
gi\|89155894, gi\|... - gi\|89206170\|ref\|ZP_01184732.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	236.0	[0..9]	[449..2]
gi\|51978130, gi\|... - gi\|52144661\|ref\|YP_082167.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51978130\|gb\|AAU19680...	236.0	[0..9]	[449..2]
gi\|74490416, gi\|... - gi\|75762098\|ref\|ZP_00742003.1\| Two component system histidine kinase [Bacillus thuringiensis serovar...	235.0	[0..17]	[449..19]
gi\|228640184, gi... - gi\|229143377\|ref\|ZP_04271808.1\| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24], gi\|... gi\|228657404, gi... - gi\|229126082\|ref\|ZP_04255104.1\| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4], gi\|... gi\|29894376, gi\|... - gi\|30018834\|ref\|NP_830465.1\| two component system histidine kinase [Bacillus cereus ATCC 14579], gi\|...	235.0	[0..9]	[449..2]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRLKFKKR LLTRMFLTSL SIITLVGFGL AWMVNVLHAQ NSYNEETAQL IAEIPQVAAE  60
   61 LREHDLIPDT SAWLEENNKQ ERYVIASCDE KFKQVWTSSL AVDRGLFDTC ERFNEIRNDS 120
  121 PPYYLTMADD RGYFVYLLAV EIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVHYNLLVMK DAAKLEQEYS KFSKRTYIRL AMVLALALIL LVSAAYWGMR PLVRMQNELQ  60
   61 SINQGKTKSL SEG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.5
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [217-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPVELEGVTQ ALNQLLQQSS AQQQRYQNAM NDLAHSLKTR LAAVHAITDD TSLNKQSANE  60
   61 KIMEQISQMD QLVKYQLKRA MLGRQGLKQE HTPIAPLVEQ LAQMLFKIYR DKQVQFKANI 120
  121 SANLLFPGNK GDLMELCGNL MENAFRLCIS QVQVTAHFNE QGDFELIVED DGPGVEEQLR 180
  181 QKIIQRGVRA DTQSPGQGIG LAVCDEIVSS YGGSLKIEES HLEGALFRIT IPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits