YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347790, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347790, gi|....

Description	E-value	Query Range	Subject Range
gi\|151937755, gi... - gi\|75854801\|ref\|ZP_00762474.1\| COG0372: Citrate synthase [Vibrio sp. Ex25], gi\|254229710\|ref\|ZP_0492... gi\|91188007, gi\|... - gi\|91228423\|ref\|ZP_01262348.1\| type II citrate synthase [Vibrio alginolyticus 12G01], gi\|91188007\|gb...	635.0	[0..1]	[428..1]
gi\|37197954, gi\|... - gi\|37679211\|ref\|NP_933820.1\| type II citrate synthase [Vibrio vulnificus YJ016], gi\|37197954\|dbj\|BAC... gi\|27363645, gi\|... - gi\|27363645\|ref\|NP_759173.1\| type II citrate synthase [Vibrio vulnificus CMCP6], gi\|27359761\|gb\|AAO0...	634.0	[0..1]	[428..1]
tr\|A0A085R9U9\|A0... - Citrate synthase OS=Vibrio cholerae GN=gltA PE=3 SV=1 gi\|116189055 - gi\|116189055\|ref\|ZP_01478815.1\| hypothetical protein VchoM_02002077 [Vibrio cholerae MO10] gi\|75814751 - gi\|75814751\|ref\|ZP_00745304.1\| COG0372: Citrate synthase [Vibrio cholerae V52] gi\|116219290 - gi\|116219290\|ref\|ZP_01484794.1\| hypothetical protein VchoV5_02002610 [Vibrio cholerae V51]	634.0	[0..1]	[428..1]
gi\|121586945, gi... - gi\|121586945\|ref\|ZP_01676725.1\| citrate synthase [Vibrio cholerae 2740-80], gi\|121548881\|gb\|EAX58924... gi\|121630291, gi... - gi\|121727399\|ref\|ZP_01680538.1\| citrate synthase [Vibrio cholerae V52], gi\|121630291\|gb\|EAX62689.1\| ... gi\|153213722, gi... - gi\|153213722\|ref\|ZP_01948974.1\| citrate synthase [Vibrio cholerae 1587], gi\|124115783\|gb\|EAY34603.1\|... gi\|153222203, gi... - gi\|153222203\|ref\|ZP_01952982.1\| citrate synthase [Vibrio cholerae MAK 757], gi\|124119063\|gb\|EAY37806... gi\|197751657, gi... - gi\|254286791\|ref\|ZP_04961744.1\| citrate synthase [Vibrio cholerae AM-19226], gi\|197751657\|ref\|YP_002... gi\|124122480, gi... - gi\|153801966\|ref\|ZP_01956552.1\| citrate synthase [Vibrio cholerae MZO-3], gi\|124122480\|gb\|EAY41223.1... gi\|148873225, gi... - gi\|153831294\|ref\|ZP_01983961.1\| citrate synthase [Vibrio cholerae 623-39], gi\|148873225\|gb\|EDL71360.... gi\|126511070, gi... - gi\|153818380\|ref\|ZP_01971047.1\| citrate synthase [Vibrio cholerae NCTC 8457], gi\|126511070\|gb\|EAZ736... gi\|149740200, gi... - gi\|153826083\|ref\|ZP_01978750.1\| citrate synthase [Vibrio cholerae MZO-2], gi\|149740200\|gb\|EDM54353.1... gi\|153821712, gi... - gi\|229511944\|ref\|ZP_04401423.1\| citrate synthase (si) [Vibrio cholerae B33], gi\|229351909\|gb\|EEO1685... gi\|11268299 - pir\|\|B82119 citrate synthase VC2092 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|227082218, gi... - gi\|227082218\|ref\|YP_002810769.1\| citrate synthase [Vibrio cholerae M66-2], gi\|227010106\|gb\|ACP06318.... gi\|229355324, gi... - gi\|229507819\|ref\|ZP_04397324.1\| citrate synthase (si) [Vibrio cholerae BX 330286], gi\|229355324\|gb\|E... gi\|229513747, gi... - gi\|229513747\|ref\|ZP_04403209.1\| citrate synthase (si) [Vibrio cholerae TMA 21], gi\|229348928\|gb\|EEO1... gi\|229343769, gi... - gi\|229519080\|ref\|ZP_04408523.1\| citrate synthase (si) [Vibrio cholerae RC9], gi\|229343769\|gb\|EEO0874... gi\|229522049, gi... - gi\|229522049\|ref\|ZP_04411466.1\| citrate synthase (si) [Vibrio cholerae TM 11079-80], gi\|229340974\|gb... gi\|229337679, gi... - gi\|229524098\|ref\|ZP_04413503.1\| citrate synthase (si) [Vibrio cholerae bv. albensis VL426], gi\|22933... gi\|15642092, gi\|... - gi\|9656641\|gb\|AAF95238.1\| citrate synthase [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|156420... gi\|229332666, gi... - gi\|229528892\|ref\|ZP_04418282.1\| citrate synthase (si) [Vibrio cholerae 12129(1)], gi\|229332666\|gb\|EE... gi\|254849178, gi... - gi\|75829406\|ref\|ZP_00758710.1\| COG0372: Citrate synthase [Vibrio cholerae MO10], gi\|254849178\|ref\|ZP... gi\|229370019, gi... - gi\|229607364\|ref\|YP_002878012.1\| citrate synthase (si) [Vibrio cholerae MJ-1236], gi\|229370019\|gb\|AC... gi\|146315819, gi... - gi\|75827399\|ref\|ZP_00756834.1\| COG0372: Citrate synthase [Vibrio cholerae O395], gi\|227118539\|ref\|YP... gi\|125621408, gi... - gi\|75818585\|ref\|ZP_00748728.1\| COG0372: Citrate synthase [Vibrio cholerae V51], gi\|254226096\|ref\|ZP_...	634.0	[0..1]	[428..3]
gi\|90411594, gi\|... - gi\|90411594\|ref\|ZP_01219604.1\| citrate synthase [Photobacterium profundum 3TCK], gi\|90327484\|gb\|EAS4...	633.0	[0..1]	[428..1]
gi\|28805828 - gi\|28805828\|dbj\|BAC59105.1\| citrate synthase [Vibrio parahaemolyticus RIMD 2210633] gi\|28897616, gi\|... - gi\|28897616\|ref\|NP_797221.1\| type II citrate synthase [Vibrio parahaemolyticus RIMD 2210633], gi\|288... gi\|149748017, gi... - gi\|153838599\|ref\|ZP_01991266.1\| citrate synthase I [Vibrio parahaemolyticus AQ3810], gi\|149748017\|gb...	631.0	[0..1]	[428..1]
gi\|69275084, gi\|... - gi\|69275084\|ref\|ZP_00610996.1\| Citrate synthase I [Mesorhizobium sp. BNC1], gi\|68193524\|gb\|EAN08176....	630.0	[0..1]	[428..1]
gi\|67156800, gi\|... - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP], gi\|67085989\|gb\|EAM0... gi\|67156800 - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP]	630.0	[0..1]	[428..1]
gi\|68546933, gi\|... - gi\|68546933\|ref\|ZP_00586476.1\| Citrate synthase I [Shewanella amazonensis SB2B], gi\|68515321\|gb\|EAN3...	630.0	[0..1]	[428..1]
gi\|54308236, gi\|... - gi\|54308236\|ref\|YP_129256.1\| citrate synthase [Photobacterium profundum SS9], gi\|46912664\|emb\|CAG194...	629.0	[0..1]	[428..28]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLKAKLEL PGNDSIELPV KQGSAGFDVI DISKLGSKGY FTFDPGFLAT ASCESAITYI  60
   61 DGDQGILLHR GYPIEQLAVD SDYLDLCYLL LYGELPTKEQ YAEFVHTVKT HTMVHEQIAF 120
  121 FFRGFRRDAH PMAMLCGVTG ALSAFYQDSL DVNDPRHREI AAYRLVSKMP TIAAMCYKYS 180
  181 SGQPFVYPRN DLSYAGNFLS MMFAVPCEEY KVNPIVERAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLQMLEEIG SVDRIPEFIA RAKDKNDPFR 300
  301 LMGFGHRVYK NFDPRAKVMR ETCHEVLKEL KVQDPLLDVA MELERIALED EYFISKKLYP 360
  361 NVDFYSGIIM KAIGIPTSMF TVLFALSRTV GWIAHWKEML DQPGHKISRP RQLYTGETAR 420
  421 DFVDLDKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	173.0
Match:	1owbA
Description:	Three Dimensional Structure Analysis Of The Variant R109L NADH Complex of Type II Citrate Synthase From E. Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
citrate (Si)-synthase activity	7.90380661459876	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	7.35970609422108	bayes_pls_golite062009
transferase activity, transferring acyl groups	4.98392594633005	bayes_pls_golite062009
catalytic activity	2.51855037019879	bayes_pls_golite062009
transferase activity	2.22659761972612	bayes_pls_golite062009
protein binding	1.36043926413144	bayes_pls_golite062009
binding	1.35315896797529	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: