YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347770, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347770, gi|....

Description	E-value	Query Range	Subject Range
gi\|66047520, gi\|... - gi\|66047520\|ref\|YP_237361.1\| Acyl-CoA thioesterase [Pseudomonas syringae pv. syringae B728a], gi\|632...	387.0	[0..1]	[287..1]
gi\|77385140, gi\|... - gi\|77461137\|ref\|YP_350644.1\| palmitoyl-CoA hydrolase [Pseudomonas fluorescens Pf0-1], gi\|77385140\|gb...	386.0	[0..1]	[287..1]
gi\|71557703, gi\|... - gi\|71737150\|ref\|YP_276466.1\| acyl-CoA thioesterase II [Pseudomonas syringae pv. phaseolicola 1448A],...	385.0	[0..1]	[287..1]
gi\|25304482 - pir\|\|AC2915 acyl-CoA thioesterase II [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|17741270, gi\|... - gi\|17936631\|ref\|NP_533421.1\| acyl-CoA thioesterase II [Agrobacterium tumefaciens str. C58], gi\|17741...	384.0	[0..2]	[285..8]
gi\|37527715, gi\|... - gi\|37527715\|ref\|NP_931060.1\| acyl-CoA thioesterase II (TEII) [Photorhabdus luminescens subsp. laumon...	384.0	[0..1]	[286..1]
gi\|152986560, gi... - gi\|94412725\|ref\|ZP_01292630.1\| hypothetical protein PaerP_01005464 [Pseudomonas aeruginosa PA7], gi\|...	381.0	[0..1]	[287..1]
gi\|11347380 - pir\|\|B83153 acyl-CoA thioesterase II PA3942 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116051982, gi... - gi\|46164577\|ref\|ZP_00205113.1\| COG1946: Acyl-CoA thioesterase [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|218889776, gi... - gi\|218889776\|ref\|YP_002438640.1\| acyl-CoA thioesterase II [Pseudomonas aeruginosa LESB58], gi\|218769... gi\|15599137, gi\|... - gi\|9950129\|gb\|AAG07329.1\|AE004812_4 acyl-CoA thioesterase II [Pseudomonas aeruginosa PAO1], gi\|15599... gi\|194547820, gi... - gi\|84319303\|ref\|ZP_00967702.1\| COG1946: Acyl-CoA thioesterase [Pseudomonas aeruginosa C3719], gi\|254... gi\|107103459 - gi\|107103459\|ref\|ZP_01367377.1\| hypothetical protein PaerPA_01004529 [Pseudomonas aeruginosa PACS2] gi\|194553615, gi... - gi\|84325329\|ref\|ZP_00973367.1\| COG1946: Acyl-CoA thioesterase [Pseudomonas aeruginosa 2192], gi\|2542...	380.0	[0..1]	[287..1]
gi\|28871792, gi\|... - gi\|28871792\|ref\|NP_794411.1\| acyl-CoA thioesterase II [Pseudomonas syringae pv. tomato str. DC3000],... tr\|Q87W94\|Q87W94... - Acyl-CoA thioesterase II OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tesB PE=4 SV=1	379.0	[0..1]	[287..1]
gi\|21957791, gi\|... - gi\|22124950\|ref\|NP_668373.1\| acyl-CoA thioesterase II [Yersinia pestis KIM], gi\|21957791\|gb\|AAM84624... gi\|45435496, gi\|... - gi\|45440639\|ref\|NP_992178.1\| acyl-CoA thioesterase II [Yersinia pestis biovar Microtus str. 91001], ...	378.0	[0..1]	[286..10]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVLDDLLS LLSLEQIEIG LFRGQSQDLG FGHVFGGQVM GQALSAAKQT VPVERQVHSL  60
   61 HSYFLRAGDE KFPIVYEVEN MRDGGSFSAR RVSAIQKGRP IFHMTCSFQE PEAGFEHQAL 120
  121 MPEVPGPEGL LNQNELAMTL RDKVPARILE KFMEDAPIEM RLVNPLHPFA PKETEPYRYV 180
  181 WLRANGAMPT GTHIHEYLLA YASDFNFLVT AAQPHGVSFL TPGIRMATID HAMWFHRPIN 240
  241 MGEWLLYSID SPNASGGRGY VRGQFFNQQG ELVASTTQEG LIRMVKGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1c8uA
Description:	Thioesterase II (TesB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-CoA thioesterase activity	2.60197973503923	bayes_pls_golite062009
CoA hydrolase activity	2.3187640589669	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	1.14159464719086	bayes_pls_golite062009
thiolester hydrolase activity	1.14125301545576	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009
binding	0.358549779743531	bayes_pls_golite062009
hydrolase activity	0.093543122203219	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: