YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347727, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347727, gi|....

Description	E-value	Query Range	Subject Range
gi\|28807267 - gi\|28807267\|dbj\|BAC60537.1\| putative glycine cleavage system transcriptional repressor [Vibrio parah... gi\|28899048, gi\|... - gi\|28899048\|ref\|NP_798653.1\| putative glycine cleavage system transcriptional repressor [Vibrio para... gi\|153840598, gi... - gi\|153840598\|ref\|ZP_01993265.1\| glycine cleavage system regulatory protein [Vibrio parahaemolyticus ...	124.0	[0..1]	[177..1]
gi\|75856777, gi\|... - gi\|75856777\|ref\|ZP_00764400.1\| COG2716: Glycine cleavage system regulatory protein [Vibrio sp. Ex25]...	122.0	[0..1]	[177..1]
gi\|77380737, gi\|... - gi\|77456734\|ref\|YP_346239.1\| phosphoserine phosphatase [Pseudomonas fluorescens Pf0-1], gi\|77380737\|...	121.0	[0..1]	[182..1]
gi\|91191607, gi\|... - gi\|91223521\|ref\|ZP_01258786.1\| putative glycine cleavage system transcriptional repressor [Vibrio al...	121.0	[0..1]	[177..1]
gi\|120599128, gi... - gi\|82740870\|ref\|ZP_00903603.1\| glycine cleavage system transcriptional repressor, putative [Shewanel... gi\|77808511, gi\|... - gi\|77816543\|ref\|ZP_00815724.1\| glycine cleavage system transcriptional repressor, putative [Shewanel... gi\|124507699, gi... - gi\|124549816\|ref\|ZP_01707853.1\| glycine cleavage system transcriptional repressor, putative [Shewane...	121.0	[0..1]	[183..1]
gi\|25286221, gi\|... - pir\|\|AF2879 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|17740955, gi\|... - gi\|17936346\|ref\|NP_533136.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	120.0	[0..1]	[183..1]
gi\|78508433, gi\|... - gi\|78692172\|ref\|ZP_00856739.1\| glycine cleavage system transcriptional repressor, putative [Shewanel...	119.0	[0..1]	[183..1]
gi\|83635631, gi\|... - gi\|83647588\|ref\|YP_436023.1\| glycine cleavage system regulatory protein [Hahella chejuensis KCTC 239...	119.0	[0..2]	[173..8]
gi\|15075961 - gi\|15075961\|emb\|CAC47515.1\| Putative formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021... gi\|15966689 - gi\|15966689\|ref\|NP_387042.1\| formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021]	119.0	[0..1]	[183..1]
gi\|37199438, gi\|... - gi\|37680689\|ref\|NP_935298.1\| glycine cleavage system regulatory protein [Vibrio vulnificus YJ016], g...	119.0	[0..1]	[177..16]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNFLVVTAM GLDRPGLVSK LARLASDCDC DIVDSRMALF GNEFTLIMML SGSWASITKI  60
   61 ESLLPSLSVE LELMTVMKRT SKHTPQNYLS RLEVRFTGKD QRGTMKRITQ FLADRSLDLA 120
  121 AVRSFSEELE NGEQTQTISL TINIPEKVEL EKLEKSIYQL SEEMALDCTI RRMEGTTSRN 180
  181 DRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1u8sA
Description:	Crystal structure of putative glycine cleavage system transcriptional repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	1.81856869558384	bayes_pls_golite062009
transcription regulator activity	1.38296114573583	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.0474189646138	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
nucleic acid binding	0.562543295273244	bayes_pls_golite062009
binding	0.386656911415569	bayes_pls_golite062009
DNA binding	0.376378714748963	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: