YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347409, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347409, gi|....

Description	E-value	Query Range	Subject Range
gi\|68056384, gi\|... - gi\|68056384\|ref\|ZP_00540507.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	354.0	[0..20]	[499..1]
gi\|255004986 - gi\|255004986\|ref\|ZP_05143587.2\| PTS enzyme II [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|269201840\|ref... - PTS system, IIABC components [Staphylococcus aureus subsp. aureus ED98] PTG3C_STAA2 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH1) GN=ptsG PE=3 SV=1 PTG3C_STAA9 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH9) GN=ptsG PE=3 SV=1 PTG3C_STAAN - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=ptsG PE=1 SV=... gi\|25287946 - pir\|\|A89781 hypothetical protein glcA [imported] - Staphylococcus aureus (strain N315) PTG3C_STAA1 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... PTG3C_STAAM - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN...	352.0	[0..20]	[497..1]
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	350.0	[0..20]	[497..1]
PTG3C_STAAC - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain COL) GN=ptsG PE=3 SV=1 PTG3C_STAAS - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MSSA476) GN=ptsG PE=3 ... PTG3C_STAA3 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300) GN=ptsG PE=3 S... PTG3C_STAAE - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Newman) GN=ptsG PE=3 S... gi\|87160101\|ref\|... - PTS system, glucose-specific IIBC component domain protein [Staphylococcus aureus subsp. aureus USA3... PTG3C_STAAW - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MW2) GN=ptsG PE=3 SV=1 PTG3C_STAAT - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=p... PTG3C_STAA8 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain NCTC 8325) GN=ptsG PE=...	344.0	[0..20]	[497..1]
PTG3C_STAAB - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) ...	344.0	[0..20]	[497..1]
gi\|221138846 - gi\|221138846\|ref\|ZP_03563648.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... gi\|221140734 - gi\|221140734\|ref\|ZP_03565227.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... PTG3C_STAAR - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MRSA252) GN=ptsG PE=3 ...	343.0	[0..20]	[497..1]
gi\|221318508 - gi\|221318508\|ref\|ZP_03599802.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTG3C_BACSU - PTS system glucose-specific EIICBA component OS=Bacillus subtilis (strain 168) GN=ptsG PE=1 SV=2 gi\|221322782 - gi\|221322782\|ref\|ZP_03604076.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTGA_BACSU, PTG3... - (P20166) PTS system, glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component... gi\|221313586 - gi\|221313586\|ref\|ZP_03595391.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon...	342.0	[0..20]	[499..1]
gi\|15613407, gi\|... - gi\|15613407\|ref\|NP_241710.1\| PTS system, glucose-specific enzyme II, A component [Bacillus haloduran... gi\|25287942 - pir\|\|D83755 PTS system, glucose-specific enzyme II, A component BH0844 [imported] - Bacillus halodur...	341.0	[0..20]	[494..1]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	340.0	[0..20]	[499..1]
PTG3C_STAES - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pt... PTG3C_STAEP - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis GN=ptsG PE=3 SV=1 PTG3C_STAEQ - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62...	340.0	[0..20]	[497..1]

Back

Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKLESTRQ IRARRLGHFV TQQWFKFAQR LSQALLIPIA ILPAAGVMLG LTVSPIPFMP  60
   61 EVLNVLMLAV GKLIFAIMPI LFAVAVAIGF CRDQGIAAFT AVFGYGVMTA TLAALADLYQ 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTQLVLGMET LDTGIAGGML IGGVTCFAVR WSQYIRLPAI FSFFEGRRSA SLLIIPLAMG  60
   61 LGYVLAHIWP SLSLLIERVS DWAVYQKPAI AFGVYGALER LLIPLGLHHI WNAPFYLEVG 120
  121 QYQLQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [248-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEVVRGEVAR YLAGDPQAGN LAGGYLIKMW GLPAAALAIW RCADNSERNR VAGIMLSAAA  60
   61 ASWLTGVTEP IEFAFMFVAP LLFLIHVMLS GLAYFVCIML DIHHSIVFSH GLVDFTLLFS 120
  121 LSRNTGWFAV LGPLTAVIYY ILFRGSILAF NLKTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [403-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLQSDGTKG SKESLRAIIA ALGGRDNIVE LNACLTRLRL SVHSPELVNK VRLSQLGAKG  60
   61 VIVMGKGVQI VYGTKAETLR KVLQRYLDTR RYEVNCR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: