YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347409, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347409, gi|....

Description	E-value	Query Range	Subject Range
gi\|68056384, gi\|... - gi\|68056384\|ref\|ZP_00540507.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	354.0	[0..20]	[499..1]
gi\|255004986 - gi\|255004986\|ref\|ZP_05143587.2\| PTS enzyme II [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|269201840\|ref... - PTS system, IIABC components [Staphylococcus aureus subsp. aureus ED98] PTG3C_STAA2 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH1) GN=ptsG PE=3 SV=1 PTG3C_STAA9 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH9) GN=ptsG PE=3 SV=1 PTG3C_STAAN - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=ptsG PE=1 SV=... gi\|25287946 - pir\|\|A89781 hypothetical protein glcA [imported] - Staphylococcus aureus (strain N315) PTG3C_STAA1 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... PTG3C_STAAM - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN...	352.0	[0..20]	[497..1]
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	350.0	[0..20]	[497..1]
PTG3C_STAAC - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain COL) GN=ptsG PE=3 SV=1 PTG3C_STAAS - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MSSA476) GN=ptsG PE=3 ... PTG3C_STAA3 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300) GN=ptsG PE=3 S... PTG3C_STAAE - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Newman) GN=ptsG PE=3 S... gi\|87160101\|ref\|... - PTS system, glucose-specific IIBC component domain protein [Staphylococcus aureus subsp. aureus USA3... PTG3C_STAAW - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MW2) GN=ptsG PE=3 SV=1 PTG3C_STAAT - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=p... PTG3C_STAA8 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain NCTC 8325) GN=ptsG PE=...	344.0	[0..20]	[497..1]
PTG3C_STAAB - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) ...	344.0	[0..20]	[497..1]
gi\|221138846 - gi\|221138846\|ref\|ZP_03563648.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... gi\|221140734 - gi\|221140734\|ref\|ZP_03565227.1\| PTS family glucose/glucoside (glc) porter component IIABC [Staphyloc... PTG3C_STAAR - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain MRSA252) GN=ptsG PE=3 ...	343.0	[0..20]	[497..1]
gi\|221318508 - gi\|221318508\|ref\|ZP_03599802.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTG3C_BACSU - PTS system glucose-specific EIICBA component OS=Bacillus subtilis (strain 168) GN=ptsG PE=1 SV=2 gi\|221322782 - gi\|221322782\|ref\|ZP_03604076.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTGA_BACSU, PTG3... - (P20166) PTS system, glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component... gi\|221313586 - gi\|221313586\|ref\|ZP_03595391.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon...	342.0	[0..20]	[499..1]
gi\|15613407, gi\|... - gi\|15613407\|ref\|NP_241710.1\| PTS system, glucose-specific enzyme II, A component [Bacillus haloduran... gi\|25287942 - pir\|\|D83755 PTS system, glucose-specific enzyme II, A component BH0844 [imported] - Bacillus halodur...	341.0	[0..20]	[494..1]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	340.0	[0..20]	[499..1]
PTG3C_STAES - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pt... PTG3C_STAEP - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis GN=ptsG PE=3 SV=1 PTG3C_STAEQ - PTS system glucose-specific EIICBA component OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62...	340.0	[0..20]	[497..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKLESTRQ IRARRLGHFV TQQWFKFAQR LSQALLIPIA ILPAAGVMLG LTVSPIPFMP  60
   61 EVLNVLMLAV GKLIFAIMPI LFAVAVAIGF CRDQGIAAFT AVFGYGVMTA TLAALADLYQ 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTQLVLGMET LDTGIAGGML IGGVTCFAVR WSQYIRLPAI FSFFEGRRSA SLLIIPLAMG  60
   61 LGYVLAHIWP SLSLLIERVS DWAVYQKPAI AFGVYGALER LLIPLGLHHI WNAPFYLEVG 120
  121 QYQLQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [248-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEVVRGEVAR YLAGDPQAGN LAGGYLIKMW GLPAAALAIW RCADNSERNR VAGIMLSAAA  60
   61 ASWLTGVTEP IEFAFMFVAP LLFLIHVMLS GLAYFVCIML DIHHSIVFSH GLVDFTLLFS 120
  121 LSRNTGWFAV LGPLTAVIYY ILFRGSILAF NLKTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [403-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLQSDGTKG SKESLRAIIA ALGGRDNIVE LNACLTRLRL SVHSPELVNK VRLSQLGAKG  60
   61 VIVMGKGVQI VYGTKAETLR KVLQRYLDTR RYEVNCR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: