YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373008, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373008, gi|....

Description	E-value	Query Range	Subject Range
gi\|145563423, gi... - gi\|77813237\|ref\|ZP_00812515.1\| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella putrefaciens CN-32... gi\|124545558, gi... - gi\|124545558\|ref\|ZP_01704751.1\| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella putrefaciens 200]...	170.0	[0..1]	[224..1]
gi\|71282673, gi\|... - gi\|71482494\|ref\|ZP_00662180.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	158.0	[0..7]	[221..24]
gi\|148655927, gi... - gi\|148655927\|ref\|YP_001276132.1\| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ro...	158.0	[0..4]	[204..1]
gi\|68512319, gi\|... - gi\|68561487\|ref\|ZP_00600782.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	158.0	[0..4]	[204..1]
gi\|113951096, gi... - gi\|160875340\|ref\|YP_001554656.1\| dimethylsulfoxide reductase, chain B [Shewanella baltica OS195], gi...	157.0	[0..1]	[224..1]
gi\|76164515, gi\|... - gi\|76260598\|ref\|ZP_00768231.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	156.0	[0..4]	[204..1]
gi\|78165820, gi\|... - gi\|78185918\|ref\|YP_373961.1\| Fe-S-cluster-containing hydrogenase components 1-like [Pelodictyon lute...	154.0	[0..7]	[221..3]
gi\|189339739, gi... - gi\|67918570\|ref\|ZP_00512166.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	153.0	[0..7]	[204..3]
gi\|78172117, gi\|... - gi\|78189918\|ref\|YP_380256.1\| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium chlor...	151.0	[0..7]	[224..3]
gi\|119353318, gi... - gi\|67936163\|ref\|ZP_00529175.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	150.0	[0..7]	[224..3]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQTQYGFY FDSSKCTGCK TCHIACKDRM TGLVRAKDDV MNNGVANLPG IIWRRVYEYG  60
   61 GGNWSQNVDG SFEQNVFAYY MSIGCNHCSQ PVCVKACPTG AMHKRREDGL VQVATELCIG 120
  121 CESCARACPY DAPQLDIERK VMTKCDGCSD RLAEGKKPIC VDSCPLRALD FDTMDNLRAK 180
  181 YGEGDGHIAP LPSPSITSPN LIIKANRNGQ PVGGSGQLLN PAEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	10.9674358961972	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	7.27554333181693	bayes_pls_golite062009
iron-sulfur cluster binding	6.49651154487804	bayes_pls_golite062009
metal cluster binding	6.49651154487804	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.77927347135001	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.39747453448396	bayes_pls_golite062009
electron carrier activity	5.05393703018095	bayes_pls_golite062009
oxidoreductase activity	4.9376838739291	bayes_pls_golite062009
NADH dehydrogenase activity	3.13953145151561	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	2.76338281383262	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	2.70037803782769	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.09041948600744	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.80621486978907	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: