YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347165, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	662 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347165, gi|....

Description	E-value	Query Range	Subject Range
gi\|77813239, gi\|... - gi\|77813239\|ref\|ZP_00812517.1\| outer membrane protein [Shewanella putrefaciens CN-32], gi\|77811687\|g...	316.0	[0..1]	[662..1]
gi\|24373342, gi\|... - gi\|24373342\|ref\|NP_717385.1\| outer membrane protein precursor MtrB [Shewanella oneidensis MR-1], gi\|... gi\|3452390 - gi\|3452390\|gb\|AAD05532.1\| outer membrane protein precursor [Shewanella putrefaciens] SO1776 - outer membrane protein precursor MtrB	275.0	[0..1]	[661..1]
gi\|160874727, gi... - gi\|160874727\|ref\|YP_001554043.1\| outer membrane protein precursor MtrB [Shewanella baltica OS195], g...	272.0	[0..1]	[661..1]
gi\|68544037, gi\|... - gi\|68544037\|ref\|ZP_00583714.1\| outer membrane protein precursor MtrB [Shewanella baltica OS155], gi\|...	272.0	[0..1]	[661..1]
gi\|78506643, gi\|... - gi\|78685525\|ref\|ZP_00850302.1\| outer membrane protein precursor MtrB [Shewanella sp. ANA-3], gi\|7850...	270.0	[0..1]	[661..1]
gi\|113885531, gi... - gi\|82497715\|ref\|ZP_00883244.1\| outer membrane protein precursor MtrB [Shewanella sp. MR-4], gi\|82404...	270.0	[0..1]	[661..1]
gi\|114048072, gi... - gi\|78689457\|ref\|ZP_00854119.1\| outer membrane protein precursor MtrB [Shewanella sp. MR-7], gi\|78511...	269.0	[0..1]	[661..1]
gi\|69953804, gi\|... - gi\|69953804\|ref\|ZP_00640776.1\| outer membrane protein precursor MtrB [Shewanella frigidimarina NCIMB...	267.0	[0..1]	[661..1]

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Predicted Domain #1

Region A:
Residues: [1-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKLNIITL GLLAATSGVS AADFSVHKAN LQGLKLDAYQ CKSCIGEKRY QGELQLSAGW  60
   61 AENDDIHAGN AFGDASDGMR AAMDADVRYR NAGYEANVQA YQLGLENSYA HLDAGRSGQY 120
  121 ALNLDYQLLT RYDSRAQTQL WHNNGVLLPD TATRDVDLQL EREKVGLGLA AQYGVMQAFI 180
  181 NYDHEQKTGN RRSSLVTPRP VNFALPVDAN TENLNAGLNI SGENWLSELA YHGSFYRNNI 240
  241 DNLSLPYLPD VYAATPDNDA HQVSLSGQYM LGRGTVNGRV AAGRMLQDGD LIQVSGNPLQ 300
  301 SWDAQVDTLD ARLGFSNMLS PRWRVNGQVD YSERDNKSSV WEFAQLEFDN VSGAFKQNVP 360
  361 MDIERLTYKL HSSYRFNSQY RLMGGYDRKE VERSYLEREQ THDDAFWAKL NIRALPNTVI 420
  421 DFGGRYENRS GSVYNAVENT SIEENPLLRK FYLADRERQA VELKANYVPL SWLTLDLNGY 480
  481 YAKDDYAKTI IGLTESTDYG YDLQLGMQLS E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1by3A
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	1.53359142384353	bayes_pls_golite062009
substrate-specific transporter activity	0.109053674865783	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [512-662]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLHLYASASQ QWIDSAIAGS QSFSSPDWYS DIADEFINLG AGFTYSGLLD DRLTLGGNYL  60
   61 FSNSASDSLI SYNEVQPYGD YYSYNHSVEL YGRYALSERM GLKLSYQYER YYDTDYSQSA 120
  121 VNSIPGLITL GDLNHNYNAH LLMFTFSYLL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1kmoA
Description:	Outer membrane transporter FecA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: