YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372919, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372919, gi|....

Description	E-value	Query Range	Subject Range
gi\|116048677, gi... - gi\|53727320\|ref\|ZP_00138359.2\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa UCBPP-PA14], gi\|11... gi\|126198394, gi... - gi\|84322833\|ref\|ZP_00970914.1\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa 2192], gi\|25424501... NADB_PSEAE - L-aspartate oxidase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... NADB_PSEAE - L-aspartate oxidase OS=Pseudomonas aeruginosa GN=nadB PE=3 SV=1	466.0	[0..1]	[535..1]
gi\|194550109, gi... - gi\|84316728\|ref\|ZP_00965194.1\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa C3719], gi\|2542391... gi\|218893296, gi... - gi\|218893296\|ref\|YP_002442165.1\| L-aspartate oxidase [Pseudomonas aeruginosa LESB58], gi\|218773524\|e... gi\|107100222 - gi\|107100222\|ref\|ZP_01364140.1\| hypothetical protein PaerPA_01001245 [Pseudomonas aeruginosa PACS2]	466.0	[0..1]	[535..1]
gi\|152984192, gi... - gi\|94418135\|ref\|ZP_01297951.1\| hypothetical protein PaerP_01000286 [Pseudomonas aeruginosa PA7], gi\|...	464.0	[0..1]	[535..1]
gi\|148549501, gi... - gi\|82739757\|ref\|ZP_00902546.1\| L-aspartate oxidase [Pseudomonas putida F1], gi\|82713168\|gb\|EAP48293....	460.0	[0..1]	[535..1]
gi\|213971127, gi... - gi\|213971127\|ref\|ZP_03399246.1\| L-aspartate oxidase [Pseudomonas syringae pv. tomato T1], gi\|2139241... tr\|Q87XF3\|Q87XF3... - L-aspartate oxidase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=nadB PE=4 SV=1 gi\|28854618, gi\|... - gi\|28871367\|ref\|NP_793986.1\| L-aspartate oxidase [Pseudomonas syringae pv. tomato str. DC3000], gi\|2...	460.0	[0..1]	[535..1]
gi\|48729749, gi\|... - gi\|77457587\|ref\|YP_347092.1\| L-aspartate oxidase [Pseudomonas fluorescens Pf0-1], gi\|77381590\|gb\|ABA...	460.0	[0..1]	[535..1]
gi\|24982892, gi\|... - gi\|26988159\|ref\|NP_743584.1\| L-aspartate oxidase [Pseudomonas putida KT2440], gi\|24982892\|gb\|AAN6704...	459.0	[0..1]	[535..1]
gi\|70728826, gi\|... - gi\|70728826\|ref\|YP_258575.1\| L-aspartate oxidase [Pseudomonas fluorescens Pf-5], gi\|68343125\|gb\|AAY9...	459.0	[0..1]	[535..26]
gi\|91794124, gi\|... - gi\|91794124\|ref\|YP_563775.1\| L-aspartate oxidase [Shewanella denitrificans OS217], gi\|91716126\|gb\|AB...	459.0	[0..1]	[537..1]
gi\|114048428, gi... - gi\|78691831\|ref\|ZP_00856423.1\| L-aspartate oxidase [Shewanella sp. MR-7], gi\|78508761\|gb\|EAP22191.1\|...	457.0	[0..1]	[537..1]

Back

Predicted Domain #1

Region A:
Residues: [1-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVVEHQSD ILVIGSGAAG LTLALHLAEK ANVILLSKGP LSEGSTYYAQ GGIASVFDES  60
   61 DTIESHVADT LVAGAGLCDK DVVTFTAENA KSAMQWLIEC GVAFDKEEAA GNNPKDAPYH 120
  121 LTREGGHSHR RILHAADATG KEVQTTLQER ALDHPNIQVL ERYNAIDLIT TRKLNRPGNR 180
  181 VLGAYVWNRN AEQVETIKAK FVALATGGSS KVYQYTSNPD VASGDGIAMA WRAGCRVANM 240
  241 EFNQFHPTCL YHADARNFLL TEALRGEGAY LRRPDGSRFM PDFDERAELA PRDIVARAID 300
  301 YEMKRLGADC VYLDISHKDA DFVMKHFPTI YSRCLELGID ITKDAIPVVP AAHYTCGGVM 360
  361 TDLHGQTDLN GLYAIGEVAY TGLHGANRLA SNSLLECLVF ARAASEDIES QLHKIPLPGL 420
  421 IPAWDESKVS NSDEEVVIAH NWHELRLFMW DYVGIVRSDK RLERALRRCL MLQQEIQEYY 480
  481 SNFRVSNNLL ELRNLVQVAE LIIRCAMDRK ESRGLHYNID HPEKLDSPLP TILQPEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	122.0
Match:	1chuA
Description:	L-aspartate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.1355816274563	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	8.87698547678677	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	8.87698547678677	bayes_pls_golite062009
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.4746833070215	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity	6.1068533307878	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.74880353813045	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	3.86336671540719	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.57282017498189	bayes_pls_golite062009
electron carrier activity	2.50633692682151	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.50603438449246	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.28982462439281	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	2.16428165652808	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.18990628739838	bayes_pls_golite062009
antioxidant activity	1.12347155061135	bayes_pls_golite062009
binding	0.98506692548414	bayes_pls_golite062009
transporter activity	0.890824576391732	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
transmembrane transporter activity	0.706117386114413	bayes_pls_golite062009
ferredoxin reductase activity	0.61713057030514	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	0.61713057030514	bayes_pls_golite062009
ferredoxin-NADP+ reductase activity	0.61713057030514	bayes_pls_golite062009
FAD binding	0.503028015880333	bayes_pls_golite062009
substrate-specific transporter activity	0.491481205015383	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.44036421821989	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.26114823844682	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: