YRC Public Data Repository - Protein Structure Prediction

Protein:	GSA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSA_SHEON.

Description	E-value	Query Range	Subject Range
GSA_HAES1 - Glutamate-1-semialdehyde 2,1-aminomutase OS=Haemophilus somnus (strain 129Pt) GN=hemL PE=3 SV=1	381.0	[0..1]	[426..1]
GSA_ACTSZ - Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) G...	379.0	[0..1]	[427..1]
GSA_HISS2 - Glutamate-1-semialdehyde 2,1-aminomutase OS=Histophilus somni (strain 2336) GN=hemL PE=3 SV=1	378.0	[0..1]	[430..1]
GSA_MANSM - Glutamate-1-semialdehyde 2,1-aminomutase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemL P...	375.0	[0..1]	[416..1]
gi\|89095113, gi\|... - gi\|89095113\|ref\|ZP_01168039.1\| glutamate-1-semialdehyde 2,1-aminomutase [Oceanospirillum sp. MED92],...	374.0	[0..1]	[427..1]
gi\|32033392 - gi\|32033392\|ref\|ZP_00133736.1\| COG0001: Glutamate-1-semialdehyde aminotransferase [Actinobacillus pl... GSA_ACTP2 - Glutamate-1-semialdehyde 2,1-aminomutase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20)...	374.0	[0..1]	[426..1]
gi\|32307578 - gi\|32307578\|gb\|AAP79194.1\| glutamate 1-semialdehyde 2,1-aminomutase [Bigelowiella natans]	373.0	[0..2]	[426..86]
GSA_PASMU - Glutamate-1-semialdehyde 2,1-aminomutase OS=Pasteurella multocida (strain Pm70) GN=hemL PE=3 SV=1 GSA_PASMU - Glutamate-1-semialdehyde 2,1-aminomutase OS=Pasteurella multocida GN=hemL PE=3 SV=1	372.0	[0..1]	[427..1]
gi\|90325830, gi\|... - gi\|90413139\|ref\|ZP_01221135.1\| glutamate-1-semialdehyde aminotransferase [Photobacterium profundum 3...	370.0	[0..1]	[430..1]
gi\|75854599, gi\|... - gi\|75854599\|ref\|ZP_00762284.1\| COG0001: Glutamate-1-semialdehyde aminotransferase [Vibrio sp. Ex25],...	370.0	[0..1]	[428..15]

Back

Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSEALFEQ AKKTIPGGVN SPVRAFNGVG GSPLFIEKAD GAYIYDADGK AYIDYVGSWG  60
   61 PMILGHNHPK IREAVLAAVH NGLSFGAPTE LEVQMAEKVI AMVPSIEQVR MVSSGTEATM 120
  121 SAIRLARGFT NRDKILKFEG CYHGHADCLL VKAGSGALTL GQPSSPGIPE DFAKHTLTAV 180
  181 YNDLDSVRSL FEQYPTEISC IIIEPVAGNM NCIPPIPGFL EGLRSLCDEF GALLIIDEVM 240
  241 TGFRVSKSGA QGHYGVTPDL TTLGKVIGGG MPVGAFGGRK DVMQFIAPTG PVYQAGTLSG 300
  301 NPIAMSAGLA QMEALCEEGL YEALSAKTKR IAEGFKAAAD KHGIPMAINY VGGMFGFFFT 360
  361 EQEHITRFDQ VTKCNIEHFR TFYHGMLDEG VYLAPSAYEA GFLSMAHGEE ELRLTLEAAD 420
  421 RVLARMKAAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2gsaA
Description:	Glutamate-1-semialdehyde aminomutase (aminotransferase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-aminobutyrate transaminase activity	3.63797881096751	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	2.35743383627426	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
5-aminolevulinate synthase activity	1.85905571238884	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	1.4383564662931	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding	0.78144409237642	bayes_pls_golite062009
transferase activity	0.737426388870721	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups	0.659071155545801	bayes_pls_golite062009
N-succinyltransferase activity	0.52897097514616	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.319452731970428	bayes_pls_golite062009
binding	0.224428709076478	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	0.15024612852051	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	0.15024612852051	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: