YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372858, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372858, gi|....

Description	E-value	Query Range	Subject Range
gi\|49527412 - gi\|49527412\|emb\|CAG61052.1\| unnamed protein product [Candida glabrata] gi\|50291337, gi\|... - gi\|50291337\|ref\|XP_448101.1\| unnamed protein product [Candida glabrata], gi\|49527412\|emb\|CAG61052.1\|...	210.0	[0..15]	[503..124]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	205.0	[0..15]	[505..102]
gi\|46107656, gi\|... - gi\|46107656\|ref\|XP_380887.1\| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi\|42547814\|gb\|E...	189.0	[0..28]	[449..1460]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	188.0	[0..8]	[460..597]
gi\|68465998, gi\|... - gi\|68465998\|ref\|XP_723067.1\| sugar transporter-like protein [Candida albicans SC5314], gi\|68465705\|r... orf19.6005, orf1... - HGT5 CGDID:CAL0005021 Assembly 19, Contig19-10236 (305167, 302933) CDS, reverse complemented, transl...	180.0	[0..2]	[513..180]

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Predicted Domain #1

Region A:
Residues: [1-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGTNQVSK THSFMTVSLI ELWERFGYYG MQALIVYFMV QRLGFDDSRA NLVWSACAAL  60
   61 IYVSPAIGGW VGDKILGTKR TMLLGAGILS VGYALMTVPT ENTWFMFSAL GVIVVGNGLF 120
  121 KPNAGNLVRK IYEGDDSKID SAFTIYYMAV NVGSTFSMLL TPWIKDYVNA QYGNEFGWHA 180
  181 AFAVCCVGIL VGLGNYALMH KSLANYGSEP DTRPVNKKSL AIVLALAALS VVASAIILEY 240
  241 EDVARVFVYA AGVAVLGIFF HLIRTSEPSE RAGLIAALIL TVQTVFFFIF YQQMSTSLAL 300
  301 FALRNVDWDF QVFGTHLWTW SPAQFQALNP IWIMVLSPVL AWSYSWAGRN NKDFSIAAKF 360
  361 ALGFAVVAIG FFIYGFAGQF AVNGKTSSWV MIWGYASYSL GELLVSGLGL AMIARYVPAR 420
  421 MGGFMMGAYF VASGISQYLG GVVANFASVP QDLVDPLQTL PVYTNLFNKL GVAAVVCTII 480
  481 ALAVLPLMRR LTESHHAHSS IENNAAASLR DVKAEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.09176719149278	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.54194478414824	bayes_pls_golite062009
ion transmembrane transporter activity	2.21266150105753	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
cation transmembrane transporter activity	1.79369588808394	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
binding	1.05701989682533	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: