YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372849, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372849, gi|....

Description	E-value	Query Range	Subject Range
gi\|78042986, gi\|... - gi\|78042986\|ref\|YP_359558.1\| glutamine synthetase [Carboxydothermus hydrogenoformans Z-2901], gi\|779...	495.0	[0..2]	[448..6]
gi\|89084286, gi\|... - gi\|89100990\|ref\|ZP_01173834.1\| GlnA [Bacillus sp. NRRL B-14911], gi\|89084286\|gb\|EAR63443.1\| GlnA [Ba...	494.0	[0..2]	[448..7]
gi\|216396, gi\|226395 - gi\|226395\|prf\|\|1510222A Gln synthetase, gi\|216396\|dbj\|BAA00730.1\| glutamine synthetase [Bacillus sub...	491.0	[0..2]	[448..7]
GLNA_BACSU - Glutamine synthetase OS=Bacillus subtilis GN=glnA PE=1 SV=3 gi\|221323144 - gi\|221323144\|ref\|ZP_03604438.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221318871 - gi\|221318871\|ref\|ZP_03600165.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221313948 - gi\|221313948\|ref\|ZP_03595753.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. NCIB 36... GLNA_BACSU - Glutamine synthetase OS=Bacillus subtilis (strain 168) GN=glnA PE=1 SV=3	490.0	[0..2]	[448..7]
gi\|809209, gi\|13... - gi\|9256972\|pdb\|1F52\|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella Typhimurium... gi\|9256971\|pdb\|1... - Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella Typhimurium With Inhibitor Phosph...	490.0	[0..2]	[448..3]
gi\|78691127, gi\|... - gi\|78691127\|ref\|ZP_00855756.1\| Glutamine synthetase type I [Shewanella sp. MR-7], gi\|78509465\|gb\|EAP... gi\|82495545, gi\|... - gi\|82495545\|ref\|ZP_00881120.1\| Glutamine synthetase type I [Shewanella sp. MR-4], gi\|82406429\|gb\|EAP...	489.0	[0..1]	[448..3]
gi\|83573059, gi\|... - gi\|83590145\|ref\|YP_430154.1\| L-glutamine synthetase [Moorella thermoacetica ATCC 39073], gi\|83573059...	489.0	[0..2]	[448..8]
gi\|17740212, gi\|... - gi\|17935663\|ref\|NP_532453.1\| glutamine synthetase I [Agrobacterium tumefaciens str. C58], gi\|1774021... gi\|25293507, gi\|... - pir\|\|AC2794 glutamine synthetase I glnA [imported] - Agrobacterium tumefaciens (strain C58, Dupont)...	489.0	[0..2]	[448..5]
gi\|56379704, gi\|... - gi\|56419862\|ref\|YP_147180.1\| glutamine synthetase (glutamate-ammonia ligase) [Geobacillus kaustophil...	488.0	[0..2]	[449..7]

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Predicted Domain #1

Region A:
Residues: [1-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIAFLKE RKITEVECVI CDMTGIARGK IAPVDKFLDE KGMRLPESVL LQTVTGDFVD  60
   61 DDIYYSLLDD ADIDFVCVPD ENAVFMLPWT IEATAQVIHD CYDRMGNPIE LSPRNVLKKV 120
  121 LSLYDEKGWE PVIAPEMEFY LTSRSDDHDL PLKPPIGRSG RPEAGRQSFS IDAANEYDPL 180
  181 FEDMYDWCEI QGLDIDTLIH EDGPAQMEIN FSHGNPLSLA DQVFVFKRTL REAALKHNVC 240
  241 ATFMAKPVTD EPGSAMHIHQ SVINKETGKN IFTNEDGTQS ALFLSYIAGL QKYIPEFLPL 300
  301 MAPNANSFRR FLPGTSAPVN LEWGIENRTC GLRIPESSPQ NRRIENRIPG ADANCYLAFA 360
  361 AGLLCGYIGM VEGLKPSTPV QGKANESRSN NPHCLPLTLE EALVAMEESD ACKEYLGESF 420
  421 TTGFVAVKQA ELENFRRVVS SWEREFLLLS V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1f1hA
Description:	Glutamine synthetase, N-terminal domain; Glutamine synthetase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ammonia ligase activity	6.27241182807427	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	5.91942691148686	bayes_pls_golite062009
ligase activity	1.27889290664771	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.0373860162850559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: