| Protein: | LNT_SHEON |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 518 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LNT_SHEON.
| Description | E-value | Query Range |
Subject Range |
|
|
377.0 | [0..1] | [513..1] |
|
|
375.0 | [0..1] | [516..1] |
|
|
373.0 | [0..1] | [516..1] |
|
|
368.0 | [0..1] | [516..1] |
|
|
365.0 | [0..1] | [513..1] |
|
|
357.0 | [0..7] | [517..19] |
|
|
356.0 | [0..10] | [517..2] |
|
|
356.0 | [0..7] | [518..2] |
|
|
355.0 | [0..7] | [518..2] |
|
|
355.0 | [0..7] | [518..2] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MLTNIRAFAQ QKSRLSALRL VLAFILGAST ALSFAPYSLW IIYPIAMSLA LWQSESLNPK 60
61 ASFFHWLSFG FGCFAVGISW VHVSMDTFGG LPLPASVALM ALLALYLALY PALTGLGLAW 120
121 FTRTNSH
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [128-225] |
1 11 21 31 41 51
| | | | | |
1 SLWRNLLLFP ALWTLTEWAR GWVLTGFPWI WAGYSQTEGP LKALASIIGA LGLSFIIAMI 60
61 AGALALCFSK RYKSLLILLP ITAVAAWVAP KLSQIQPT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [226-518] |
1 11 21 31 41 51
| | | | | |
1 GESVKVALVQ GNIPQSMKWE PEALWPTLLK YMDLSREHFD ADIIVWPEAA IPAPESMVQD 60
61 FLDNANKVAN LNHTSIITGI ISRQQEDFYN SLIVLGNHNQ KQQDNPDYES DGSNQFKKHH 120
121 LLPIGEFVPF QALLRPIAPF FNLPMSSFAR GDYLQPNLSA LGHKVAPAIC YEIAFPEQLR 180
181 DSVNLGTDLL LTVSNDAWFG TSNGPLQHME IAQMRAIELG RPLVRATNNG VTAVVDENGN 240
241 ITAALPQFET GVLSATIPLV TGQTWFAKIG QTPLLILCGA LLLVGFIRRQ KQQ
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1j31A |
| Description: | Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.64442398754697 | bayes_pls_golite062009 |
| hydrolase activity | 1.52289641570734 | bayes_pls_golite062009 |
| binding | 0.550662194183032 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.472813950465394 | bayes_pls_golite062009 |
| protein binding | 0.360416829919237 | bayes_pls_golite062009 |
